View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_123 (Length: 209)
Name: NF19266_low_123
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_123 |
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Alignment Details
Target: chr8 (Bit Score: 168; Significance: 3e-90; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 168; E-Value: 3e-90
Query Start/End: Original strand, 1 - 192
Target Start/End: Original strand, 6026130 - 6026321
Alignment:
| Q |
1 |
tgtcgaagaatatggaggtagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtga |
100 |
Q |
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| T |
6026130 |
tgtcaaagaaaagggaggtagaaaatgatagagaagtgagtaaaatagggtcaagtccaccaagctgtgagcataaatgctatgattgttttccatgtga |
6026229 |
T |
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| Q |
101 |
agctactcaagtaccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcat |
192 |
Q |
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| T |
6026230 |
agctactcaagtgccaagcagaacaagccatttggggattatgtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttcat |
6026321 |
T |
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Target: chr2 (Bit Score: 38; Significance: 0.000000000001; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 45 - 118
Target Start/End: Original strand, 42824166 - 42824239
Alignment:
| Q |
45 |
atagggtcaagtccaccaagctgtgagcataaatgttatggttgttttccatgtgaagctactcaagtaccaag |
118 |
Q |
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| T |
42824166 |
atagggtcaagtccaccaagctgtgagcacaagtgttatggatgcaatccatgtgaagccattcaagttccaag |
42824239 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 36; E-Value: 0.00000000002
Query Start/End: Original strand, 143 - 190
Target Start/End: Original strand, 42824276 - 42824323
Alignment:
| Q |
143 |
gtatgcaaattatgagcctgagagttggaaatgcaagtgtggtccttc |
190 |
Q |
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| T |
42824276 |
gtatgcaaattatgagcctgaaagctggaaatgcaaatgtggtccttc |
42824323 |
T |
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