View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_125 (Length: 203)
Name: NF19266_low_125
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_125 |
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Alignment Details
Target: chr3 (Bit Score: 54; Significance: 3e-22; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 54; E-Value: 3e-22
Query Start/End: Original strand, 13 - 66
Target Start/End: Complemental strand, 36421920 - 36421867
Alignment:
| Q |
13 |
aagaatatatgttgcattaaaattattctctcttgattaatcaaagaggttttc |
66 |
Q |
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| T |
36421920 |
aagaatatatgttgcattaaaattattctctcttgattaatcaaagaggttttc |
36421867 |
T |
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Target: chr3; HSP #2
Raw Score: 38; E-Value: 0.000000000001
Query Start/End: Original strand, 51 - 95
Target Start/End: Complemental strand, 36421852 - 36421807
Alignment:
| Q |
51 |
aatcaaagaggttttcaagcacaacattctatt-tcataaaaatta |
95 |
Q |
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| T |
36421852 |
aatcaaagaggttttcaagcacaacattctattatcataaaaatta |
36421807 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 35; E-Value: 0.00000000007
Query Start/End: Original strand, 148 - 186
Target Start/End: Complemental strand, 36421799 - 36421761
Alignment:
| Q |
148 |
ttatatttattttactataaacaccaaacatgcataaac |
186 |
Q |
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| T |
36421799 |
ttatttttattttactataaacaccaaacatgcataaac |
36421761 |
T |
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