View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_15 (Length: 481)

Name: NF19266_low_15
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_15
NF19266_low_15
[»] chr1 (23 HSPs)
chr1 (91-480)||(38219633-38220022)
chr1 (174-234)||(25006078-25006135)
chr1 (180-240)||(27738230-27738287)
chr1 (182-240)||(30371111-30371166)
chr1 (257-296)||(2194486-2194525)
chr1 (242-293)||(4700193-4700244)
chr1 (180-241)||(5592735-5592793)
chr1 (183-240)||(7218127-7218181)
chr1 (260-291)||(34278804-34278835)
chr1 (180-240)||(28467357-28467414)
chr1 (255-289)||(34619519-34619553)
chr1 (163-201)||(37842388-37842426)
chr1 (210-240)||(46499931-46499961)
chr1 (255-297)||(48064180-48064222)
chr1 (180-240)||(49517033-49517090)
chr1 (255-288)||(4920907-4920940)
chr1 (168-201)||(26779963-26779996)
chr1 (208-240)||(3062963-3062995)
chr1 (209-241)||(4548683-4548715)
chr1 (168-238)||(24915089-24915156)
chr1 (255-295)||(27820497-27820536)
chr1 (183-241)||(30257645-30257700)
chr1 (243-294)||(35058900-35058952)
[»] chr6 (9 HSPs)
chr6 (180-236)||(4006681-4006734)
chr6 (180-240)||(2514665-2514722)
chr6 (202-240)||(7713988-7714026)
chr6 (203-240)||(29274299-29274336)
chr6 (212-240)||(5551425-5551453)
chr6 (208-240)||(8349739-8349771)
chr6 (208-240)||(9582673-9582705)
chr6 (174-236)||(24626262-24626321)
chr6 (175-241)||(29296338-29296401)
[»] chr2 (14 HSPs)
chr2 (180-240)||(11513861-11513918)
chr2 (180-238)||(43299452-43299508)
chr2 (180-240)||(10143135-10143192)
chr2 (180-239)||(5043610-5043666)
chr2 (203-240)||(6546941-6546978)
chr2 (180-224)||(13056113-13056158)
chr2 (181-240)||(33942113-33942169)
chr2 (168-242)||(12464511-12464582)
chr2 (182-241)||(32757514-32757576)
chr2 (212-240)||(40758986-40759014)
chr2 (255-291)||(41702342-41702378)
chr2 (214-242)||(41851246-41851274)
chr2 (170-240)||(43141834-43141901)
chr2 (168-200)||(44590034-44590066)
[»] chr7 (17 HSPs)
chr7 (168-238)||(12110325-12110392)
chr7 (180-240)||(1417227-1417284)
chr7 (240-296)||(12110248-12110305)
chr7 (203-240)||(12835007-12835044)
chr7 (203-240)||(23918920-23918957)
chr7 (208-241)||(46825060-46825093)
chr7 (213-241)||(946714-946742)
chr7 (178-240)||(9527138-9527197)
chr7 (170-240)||(17989063-17989130)
chr7 (255-291)||(25595983-25596019)
chr7 (174-240)||(27548226-27548289)
chr7 (208-240)||(30456525-30456557)
chr7 (208-240)||(31338471-31338503)
chr7 (243-290)||(34672893-34672941)
chr7 (208-240)||(39591542-39591574)
chr7 (186-240)||(45813236-45813287)
chr7 (208-240)||(46531496-46531528)
[»] chr3 (12 HSPs)
chr3 (178-240)||(48397609-48397668)
chr3 (180-240)||(1816546-1816603)
chr3 (256-290)||(30574070-30574104)
chr3 (168-240)||(30956664-30956733)
chr3 (168-240)||(30972476-30972545)
chr3 (180-240)||(31337451-31337508)
chr3 (168-240)||(33405205-33405274)
chr3 (257-291)||(43079650-43079684)
chr3 (213-242)||(3182442-3182471)
chr3 (203-240)||(42808942-42808979)
chr3 (254-290)||(19679461-19679497)
chr3 (256-288)||(31762206-31762238)
[»] chr8 (10 HSPs)
chr8 (180-240)||(34770855-34770912)
chr8 (254-291)||(31751712-31751749)
chr8 (180-238)||(6509353-6509408)
chr8 (255-294)||(32976304-32976343)
chr8 (243-288)||(6526369-6526414)
chr8 (212-241)||(39881826-39881855)
chr8 (203-240)||(45071165-45071202)
chr8 (255-295)||(1112735-1112775)
chr8 (212-240)||(14482165-14482193)
chr8 (208-240)||(28784870-28784902)
[»] chr5 (12 HSPs)
chr5 (172-236)||(34205206-34205267)
chr5 (257-294)||(11715018-11715055)
chr5 (174-236)||(18857444-18857503)
chr5 (255-290)||(42573936-42573971)
chr5 (255-293)||(6593175-6593213)
chr5 (168-240)||(9202786-9202855)
chr5 (181-240)||(10272482-10272538)
chr5 (203-240)||(32969187-32969224)
chr5 (256-288)||(5559610-5559642)
chr5 (255-291)||(29845054-29845090)
chr5 (255-291)||(38105020-38105056)
chr5 (180-240)||(40534159-40534219)
[»] chr4 (16 HSPs)
chr4 (174-238)||(2996538-2996599)
chr4 (169-240)||(51630074-51630142)
chr4 (180-234)||(7368105-7368157)
chr4 (256-291)||(19039658-19039693)
chr4 (242-288)||(20936357-20936404)
chr4 (260-291)||(46201276-46201307)
chr4 (255-294)||(54214889-54214928)
chr4 (168-240)||(47119003-47119072)
chr4 (180-240)||(30024663-30024726)
chr4 (180-238)||(13949894-13949949)
chr4 (208-244)||(19429563-19429599)
chr4 (208-240)||(46013375-46013407)
chr4 (208-240)||(46247181-46247213)
chr4 (255-291)||(47399411-47399447)
chr4 (170-240)||(49219102-49219169)
chr4 (164-200)||(52734803-52734839)
[»] scaffold0024 (1 HSPs)
scaffold0024 (174-238)||(27541-27602)


Alignment Details
Target: chr1 (Bit Score: 370; Significance: 0; HSPs: 23)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 370; E-Value: 0
Query Start/End: Original strand, 91 - 480
Target Start/End: Complemental strand, 38220022 - 38219633
Alignment:
Q  91 catcaacccacatttaaagacgtattaaacagcttatgagtgatgacatattcataagctgttttcttaatatatatgttcttcaagagagcttatgaaa 190  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38220022 catcaatccacatttaaagacgtattaaacagcttatgagtgatgacatattcataagctgttttcttaatatatatgttcttcaagagagcttatgaaa 38219923  T
Q  191 acaacttatagaagctcatataaaaacaatttgactttattttatctttttcataagtgcttaactataagctgcaaattaaggtgtttatccaaacagg 290  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| ||||||||||||||||    
T  38219922 acaacttatagaagctcatataaaaacaatttgactttattttatctttttcataagtgcttagctataagctgcaaattaagatgtttatccaaacagg 38219823  T
Q  291 gtctaagaagatgagaatgaataataagaattagatagtaacctgggcagcattgaaaccagaaagaaggttctgactctgcaccaactgtgttgagaac 390  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38219822 gtctaagaagatgagaatgaataataagaattagatagtaacctgggcagcattgaaaccagaaagaaggttctgactctgcaccaactgtgttgagaac 38219723  T
Q  391 aaagatgccatgactaacaataaacttttttgggtggaaaatgtggcacaaaactttctaggtctatcacctaatcttcttctcactcga 480  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||    
T  38219722 aaagatgccatgactaacaataaacttttttgggtggaaaatgtggcacaaaactttctaggtttatcacctaatcttcttcacactcga 38219633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 234
Target Start/End: Original strand, 25006078 - 25006135
Alignment:
Q  174 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttatttta 234  Q
    ||||| ||||||||||||||||||||   |||| |||| ||||||||||||||||||||||    
T  25006078 caagatagcttatgaaaacaacttat---agcttatatgaaaacaatttgactttatttta 25006135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 27738230 - 27738287
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||||||| ||||||   || |||| ||||||||||||||||||||||||||||    
T  27738230 agcttatgaaaacaaattatag---cttatatgaaaacaatttgactttattttatctttt 27738287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 182 - 240
Target Start/End: Complemental strand, 30371166 - 30371111
Alignment:
Q  182 cttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||||||||||||   || |||| |||||||||||| |||||||||||||||    
T  30371166 cttatgaaaacaacttatag---cttatatgaaaacaatttgagtttattttatctttt 30371111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 257 - 296
Target Start/End: Original strand, 2194486 - 2194525
Alignment:
Q  257 ataagctgcaaattaaggtgtttatccaaacagggtctaa 296  Q
    ||||||||||||||||| ||||||||||||||||| ||||    
T  2194486 ataagctgcaaattaagctgtttatccaaacagggcctaa 2194525  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 293
Target Start/End: Original strand, 4700193 - 4700244
Alignment:
Q  242 cataagtgcttaactataagctgcaaattaaggtgtttatccaaacagggtc 293  Q
    ||||||||||||  || ||||||||||||||| |||| ||||||||||||||    
T  4700193 cataagtgcttatgtaaaagctgcaaattaagttgttaatccaaacagggtc 4700244  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 241
Target Start/End: Original strand, 5592735 - 5592793
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatcttttt 241  Q
    ||||||||||||||||||||||   || |||| | ||||||| |||||||||||||||||||    
T  5592735 agcttatgaaaacaacttatag---cttatatgacaacaattcgactttattttatcttttt 5592793  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 183 - 240
Target Start/End: Original strand, 7218127 - 7218181
Alignment:
Q  183 ttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||   || |||| |||||||||||||||||||||| |||||    
T  7218127 ttatgaaaacaacttatag---cttatatgaaaacaatttgactttattttacctttt 7218181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 291
Target Start/End: Original strand, 34278804 - 34278835
Alignment:
Q  260 agctgcaaattaaggtgtttatccaaacaggg 291  Q
    ||||||||||||||||||||||||||||||||    
T  34278804 agctgcaaattaaggtgtttatccaaacaggg 34278835  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #10
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 28467357 - 28467414
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||| |||   || |||| |||| |||||||||||||||||||||||    
T  28467357 agcttatgaaaacaacttgtag---cttatatgaaaataatttgactttattttatctttt 28467414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #11
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 289
Target Start/End: Original strand, 34619519 - 34619553
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacag 289  Q
    ||||||||||||||||||| |||||||||||||||    
T  34619519 ctataagctgcaaattaagctgtttatccaaacag 34619553  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #12
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 163 - 201
Target Start/End: Original strand, 37842388 - 37842426
Alignment:
Q  163 tatatgttcttcaagagagcttatgaaaacaacttatag 201  Q
    |||| ||||||||||| ||||||||||||||||||||||    
T  37842388 tataagttcttcaagatagcttatgaaaacaacttatag 37842426  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #13
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 210 - 240
Target Start/End: Original strand, 46499931 - 46499961
Alignment:
Q  210 ataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||||||||||||||    
T  46499931 ataaaaacaatttgactttattttatctttt 46499961  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #14
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 297
Target Start/End: Complemental strand, 48064222 - 48064180
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacagggtctaag 297  Q
    ||||||||||||||||||| |||||||||||||| || |||||    
T  48064222 ctataagctgcaaattaagttgtttatccaaacatggcctaag 48064180  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #15
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 49517090 - 49517033
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||| |||||||   || | || ||||||||||||||||||||||||||||    
T  49517090 agcttatgaaaacagcttatag---cttaaatgaaaacaatttgactttattttatctttt 49517033  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #16
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 255 - 288
Target Start/End: Original strand, 4920907 - 4920940
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaaca 288  Q
    ||||||||||||||||||| ||||||||||||||    
T  4920907 ctataagctgcaaattaagctgtttatccaaaca 4920940  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #17
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 168 - 201
Target Start/End: Original strand, 26779963 - 26779996
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatag 201  Q
    ||||||||||| ||||||||||||||||||||||    
T  26779963 gttcttcaagatagcttatgaaaacaacttatag 26779996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #18
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 3062995 - 3062963
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||| ||||||||||||||    
T  3062995 atataaaaacaatttgacattattttatctttt 3062963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #19
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 209 - 241
Target Start/End: Complemental strand, 4548715 - 4548683
Alignment:
Q  209 tataaaaacaatttgactttattttatcttttt 241  Q
    |||||||||| ||||||||||||||||||||||    
T  4548715 tataaaaacagtttgactttattttatcttttt 4548683  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #20
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 238
Target Start/End: Original strand, 24915089 - 24915156
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 238  Q
    ||||| ||||| |||||||||||||| ||||||| |    ||| ||||||||||| |||||||||||||||    
T  24915089 gttctccaagacagcttatgaaaacagcttatagcat---atacaaaaacaatttaactttattttatctt 24915156  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #21
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 295
Target Start/End: Original strand, 27820497 - 27820536
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacagggtcta 295  Q
    ||||||||||||||| ||| |||||||||||||||||||||    
T  27820497 ctataagctgcaaat-aagttgtttatccaaacagggtcta 27820536  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #22
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 183 - 241
Target Start/End: Complemental strand, 30257700 - 30257645
Alignment:
Q  183 ttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatcttttt 241  Q
    ||||||||||||||||   ||||| ||||  ||||| ||||||||||||||||||||||    
T  30257700 ttatgaaaacaactta---aagcttatatggaaacagtttgactttattttatcttttt 30257645  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #23
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 294
Target Start/End: Original strand, 35058900 - 35058952
Alignment:
Q  243 ataagtgcttaa-ctataagctgcaaattaaggtgtttatccaaacagggtct 294  Q
    |||||||||||  ||||||| |||||| |||| ||||||||||||||||||||    
T  35058900 ataagtgcttatgctataagttgcaaaataagctgtttatccaaacagggtct 35058952  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 9)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 236
Target Start/End: Complemental strand, 4006734 - 4006681
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatc 236  Q
    ||||||||||||||||||||||   || |||||||||||||||||||||||||||||    
T  4006734 agcttatgaaaacaacttatag---cttatataaaaacaatttgactttattttatc 4006681  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 2514722 - 2514665
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||| |||||||||   |||||||||||  | |||||||||||||||||||||    
T  2514722 agcttatgaaaataacttatag---ctcatataaaattagtttgactttattttatctttt 2514665  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 202 - 240
Target Start/End: Complemental strand, 7714026 - 7713988
Alignment:
Q  202 aagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||| |||| ||||||||||||||||||||||||||||    
T  7714026 aagcttatatgaaaacaatttgactttattttatctttt 7713988  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 29274299 - 29274336
Alignment:
Q  203 agctcatataaaaacaatttgactttattttatctttt 240  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  29274299 agcttatatgaaaacaatttgactttattttatctttt 29274336  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 5551453 - 5551425
Alignment:
Q  212 aaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||||||||||||    
T  5551453 aaaaacaatttgactttattttatctttt 5551425  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 8349739 - 8349771
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||||||| |||||||||||||||||    
T  8349739 atataaaaacaatttaactttattttatctttt 8349771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 9582673 - 9582705
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||||||| |||||||||||||||||    
T  9582673 atataaaaacaatttcactttattttatctttt 9582705  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 236
Target Start/End: Complemental strand, 24626321 - 24626262
Alignment:
Q  174 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatc 236  Q
    ||||| ||||||||||||||||||||||||    ||| ||||||||||| ||||| |||||||    
T  24626321 caagatagcttatgaaaacaacttatagaa---tatacaaaaacaatttaactttgttttatc 24626262  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 175 - 241
Target Start/End: Original strand, 29296338 - 29296401
Alignment:
Q  175 aagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatcttttt 241  Q
    ||||||||||| |||||||||||||   | || ||| ||||| ||||| ||||||||||||||||||    
T  29296338 aagagagcttaagaaaacaacttat---accttatacaaaaataatttaactttattttatcttttt 29296401  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 39; Significance: 0.0000000000007; HSPs: 14)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 11513918 - 11513861
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||||||||||||||   || |||| ||||||||||||||||||||||||||||    
T  11513918 agcttatgaaaacaacttatag---cttatatgaaaacaatttgactttattttatctttt 11513861  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 43299452 - 43299508
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 238  Q
    |||||||||||||||||||||||   | ||| ||||||| |||||||||||||||||||    
T  43299452 agcttatgaaaacaacttataga--tttatacaaaaacagtttgactttattttatctt 43299508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 10143192 - 10143135
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||| |||||||||   || ||||||||||| |||||||| ||||||||||||    
T  10143192 agcttatgaaaaaaacttatag---cttatataaaaacagtttgacttaattttatctttt 10143135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 239
Target Start/End: Original strand, 5043610 - 5043666
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatcttt 239  Q
    |||||||||||||||||| |||   || |||| |||||| ||||||||||||||||||||    
T  5043610 agcttatgaaaacaacttctag---cttatatgaaaacagtttgactttattttatcttt 5043666  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 6546978 - 6546941
Alignment:
Q  203 agctcatataaaaacaatttgactttattttatctttt 240  Q
    |||| ||||| |||||||||||||||||||||||||||    
T  6546978 agcttatatataaacaatttgactttattttatctttt 6546941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 224
Target Start/End: Complemental strand, 13056158 - 13056113
Alignment:
Q  180 agcttatgaaaacaacttatag-aagctcatataaaaacaatttga 224  Q
    |||||||||||||||||||||| ||||| |||| ||||||||||||    
T  13056158 agcttatgaaaacaacttatagcaagcttatatgaaaacaatttga 13056113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Complemental strand, 33942169 - 33942113
Alignment:
Q  181 gcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||||   || | || |||||| |||||||||||||||||||||    
T  33942169 gcttatgaaaacaacttatag---cttacatgaaaacagtttgactttattttatctttt 33942113  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 242
Target Start/End: Original strand, 12464511 - 12464582
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttttc 242  Q
    ||||| ||||| |||||||||||| | ||||||| |    ||| ||||||||||| |||||||||||||||||||    
T  12464511 gttctccaagatagcttatgaaaatagcttatagcat---atacaaaaacaatttaactttattttatctttttc 12464582  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 182 - 241
Target Start/End: Original strand, 32757514 - 32757576
Alignment:
Q  182 cttatgaaaacaacttataga---agctcatataaaaacaatttgactttattttatcttttt 241  Q
    ||||||||||||||||||||    |||| ||||||||| ||||||| || |||||||||||||    
T  32757514 cttatgaaaacaacttatagttatagcttatataaaaagaatttgatttgattttatcttttt 32757576  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 40759014 - 40758986
Alignment:
Q  212 aaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||||||||||||    
T  40759014 aaaaacaatttgactttattttatctttt 40758986  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 41702342 - 41702378
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacaggg 291  Q
    |||||||||| |||||||| |||||||||||||||||    
T  41702342 ctataagctgaaaattaagctgtttatccaaacaggg 41702378  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 214 - 242
Target Start/End: Original strand, 41851246 - 41851274
Alignment:
Q  214 aaacaatttgactttattttatctttttc 242  Q
    |||||||||||||||||||||||||||||    
T  41851246 aaacaatttgactttattttatctttttc 41851274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 43141901 - 43141834
Alignment:
Q  170 tcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||| || |||||||||||||| |||||||   || ||||  |||||||||||||||| ||||||||||    
T  43141901 tcttcaggatagcttatgaaaacatcttatag---cttatatggaaacaatttgactttactttatctttt 43141834  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 168 - 200
Target Start/End: Complemental strand, 44590066 - 44590034
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttata 200  Q
    ||||||||||| |||||||||||||||||||||    
T  44590066 gttcttcaagatagcttatgaaaacaacttata 44590034  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 37; Significance: 0.00000000001; HSPs: 17)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 168 - 238
Target Start/End: Complemental strand, 12110392 - 12110325
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 238  Q
    ||||||||||| |||||||||||||| |||||||   || |||  ||||||||||||||||||||||||||    
T  12110392 gttcttcaagatagcttatgaaaacagcttatag---cttataccaaaacaatttgactttattttatctt 12110325  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1417284 - 1417227
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||| |   || |||| ||||||||||||||||||||||||||||    
T  1417284 agcttatgaaaacaacttattg---cttatatgaaaacaatttgactttattttatctttt 1417227  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 240 - 296
Target Start/End: Complemental strand, 12110305 - 12110248
Alignment:
Q  240 ttcataagtgcttaa-ctataagctgcaaattaaggtgtttatccaaacagggtctaa 296  Q
    ||||||||||||||  ||||||| ||||||||||| |||||||| |||||||| ||||    
T  12110305 ttcataagtgcttatgctataagttgcaaattaagctgtttatcgaaacagggcctaa 12110248  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #4
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 12835007 - 12835044
Alignment:
Q  203 agctcatataaaaacaatttgactttattttatctttt 240  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  12835007 agctaatatgaaaacaatttgactttattttatctttt 12835044  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 23918957 - 23918920
Alignment:
Q  203 agctcatataaaaacaatttgactttattttatctttt 240  Q
    |||| |||| ||||||||||||||||||||||||||||    
T  23918957 agcttatatgaaaacaatttgactttattttatctttt 23918920  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 208 - 241
Target Start/End: Complemental strand, 46825093 - 46825060
Alignment:
Q  208 atataaaaacaatttgactttattttatcttttt 241  Q
    |||| |||||||||||||||||||||||||||||    
T  46825093 atatgaaaacaatttgactttattttatcttttt 46825060  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 213 - 241
Target Start/End: Complemental strand, 946742 - 946714
Alignment:
Q  213 aaaacaatttgactttattttatcttttt 241  Q
    |||||||||||||||||||||||||||||    
T  946742 aaaacaatttgactttattttatcttttt 946714  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 178 - 240
Target Start/End: Original strand, 9527138 - 9527197
Alignment:
Q  178 agagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||||||||||||||||    | |||| |||||| |||||||||||| ||||||||    
T  9527138 agagcttatgaaaacaacttatagt---ttatatgaaaacagtttgactttattatatctttt 9527197  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 240
Target Start/End: Original strand, 17989063 - 17989130
Alignment:
Q  170 tcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||| |||||||||||||||||| ||||||    | |||| |||||| |||||||||||||||| ||||    
T  17989063 tcttcaggagagcttatgaaaacaaattatagt---ttatatgaaaacagtttgactttattttatatttt 17989130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 25596019 - 25595983
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacaggg 291  Q
    ||||||||||||| ||||| |||||||||||||||||    
T  25596019 ctataagctgcaagttaagttgtttatccaaacaggg 25595983  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 174 - 240
Target Start/End: Complemental strand, 27548289 - 27548226
Alignment:
Q  174 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||| |||||||||||||| |||||||   || | || ||||||||| ||||||||||||||||||    
T  27548289 caagatagcttatgaaaacagcttatag---cttaaatgaaaacaattagactttattttatctttt 27548226  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 30456525 - 30456557
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    |||| ||||||||||||||||||||||||||||    
T  30456525 atatgaaaacaatttgactttattttatctttt 30456557  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 31338503 - 31338471
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  31338503 atataaaaacagtttgactttattttatctttt 31338471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 243 - 290
Target Start/End: Original strand, 34672893 - 34672941
Alignment:
Q  243 ataagtgcttaa-ctataagctgcaaattaaggtgtttatccaaacagg 290  Q
    |||||||||||  |||||||||| |||||||| ||||||||||||||||    
T  34672893 ataagtgcttatgctataagctgaaaattaagctgtttatccaaacagg 34672941  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 39591542 - 39591574
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    |||| ||||||||||||||||||||||||||||    
T  39591542 atatgaaaacaatttgactttattttatctttt 39591574  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 186 - 240
Target Start/End: Original strand, 45813236 - 45813287
Alignment:
Q  186 tgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||   | |||| ||||||| ||||||||||||||||||||    
T  45813236 tgaaaacaacttataga---ttatatgaaaacaagttgactttattttatctttt 45813287  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #17
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 46531528 - 46531496
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  46531528 atataaaaacagtttgactttattttatctttt 46531496  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 37; Significance: 0.00000000001; HSPs: 12)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 178 - 240
Target Start/End: Complemental strand, 48397668 - 48397609
Alignment:
Q  178 agagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||| |||||||||||||||||   || | |||||||||||||||||||||||||||||||    
T  48397668 agagctaatgaaaacaacttatag---cttaaataaaaacaatttgactttattttatctttt 48397609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 1816603 - 1816546
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||||    || ||| ||||||| |||||||||||||||||||||    
T  1816603 agcttatgaaaacaacttatat---cttatacaaaaacagtttgactttattttatctttt 1816546  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 256 - 290
Target Start/End: Original strand, 30574070 - 30574104
Alignment:
Q  256 tataagctgcaaattaaggtgtttatccaaacagg 290  Q
    |||||||||||||||| ||||||||||||||||||    
T  30574070 tataagctgcaaattatggtgtttatccaaacagg 30574104  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 30956664 - 30956733
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||| ||||| ||||| ||||||||||||||||   |  ||| ||||||||||| |||||||||||||||||    
T  30956664 gttctccaagatagcttttgaaaacaacttatag---cctatacaaaaacaatttaactttattttatctttt 30956733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 30972476 - 30972545
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||| ||||| ||||| ||||||||||||||||   |  ||| ||||||||||| |||||||||||||||||    
T  30972476 gttctccaagatagcttttgaaaacaacttatag---cctatacaaaaacaatttaactttattttatctttt 30972545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 180 - 240
Target Start/End: Original strand, 31337451 - 31337508
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||| ||||||||||    || ||||||||||| |||||||||||||||||||||    
T  31337451 agcttatgaatacaacttataa---cttatataaaaacagtttgactttattttatctttt 31337508  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #7
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 33405205 - 33405274
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||| |||||||||||||| |||||   |||| |||| ||||||| || ||||||||||| |||||    
T  33405205 gttcttcaagatagcttatgaaaacagcttat---agcttatatgaaaacaaattaactttattttacctttt 33405274  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 257 - 291
Target Start/End: Complemental strand, 43079684 - 43079650
Alignment:
Q  257 ataagctgcaaattaaggtgtttatccaaacaggg 291  Q
    ||||||||||||||||| |||||||||||||||||    
T  43079684 ataagctgcaaattaagctgtttatccaaacaggg 43079650  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 213 - 242
Target Start/End: Original strand, 3182442 - 3182471
Alignment:
Q  213 aaaacaatttgactttattttatctttttc 242  Q
    ||||||||||||||||||||||||||||||    
T  3182442 aaaacaatttgactttattttatctttttc 3182471  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 42808979 - 42808942
Alignment:
Q  203 agctcatataaaaacaatttgactttattttatctttt 240  Q
    |||| ||||||||||||||| |||||||||||||||||    
T  42808979 agcttatataaaaacaatttaactttattttatctttt 42808942  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 254 - 290
Target Start/End: Original strand, 19679461 - 19679497
Alignment:
Q  254 actataagctgcaaattaaggtgtttatccaaacagg 290  Q
    |||||||||||||||||||| ||||||||||| ||||    
T  19679461 actataagctgcaaattaagttgtttatccaaccagg 19679497  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 31762238 - 31762206
Alignment:
Q  256 tataagctgcaaattaaggtgtttatccaaaca 288  Q
    |||||||||||||||||| ||||||||||||||    
T  31762238 tataagctgcaaattaagttgtttatccaaaca 31762206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 35; Significance: 0.0000000002; HSPs: 10)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 34770912 - 34770855
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||||||||||||||   || | || ||||||||||||||||||||||||||||    
T  34770912 agcttatgaaaacaacttatag---cttaaatgaaaacaatttgactttattttatctttt 34770855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 254 - 291
Target Start/End: Original strand, 31751712 - 31751749
Alignment:
Q  254 actataagctgcaaattaaggtgtttatccaaacaggg 291  Q
    |||||||||||||||||||| |||||||||||||||||    
T  31751712 actataagctgcaaattaagttgtttatccaaacaggg 31751749  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 6509353 - 6509408
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 238  Q
    |||||||||||||| |||||||   || ||||||| |||||||||||||||||||||||    
T  6509353 agcttatgaaaacagcttatag---cttatataaatacaatttgactttattttatctt 6509408  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 32976343 - 32976304
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacagggtct 294  Q
    |||||||||||| ||||||||||||||||||||| |||||    
T  32976343 ctataagctgcatattaaggtgtttatccaaacatggtct 32976304  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 243 - 288
Target Start/End: Original strand, 6526369 - 6526414
Alignment:
Q  243 ataagtgcttaactataagctgcaaattaaggtgtttatccaaaca 288  Q
    |||| ||||||  |||||||||||||||||| ||||||||||||||    
T  6526369 ataaatgcttatgtataagctgcaaattaagctgtttatccaaaca 6526414  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 212 - 241
Target Start/End: Original strand, 39881826 - 39881855
Alignment:
Q  212 aaaaacaatttgactttattttatcttttt 241  Q
    ||||||||||||||||||||||||||||||    
T  39881826 aaaaacaatttgactttattttatcttttt 39881855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Complemental strand, 45071202 - 45071165
Alignment:
Q  203 agctcatataaaaacaatttgactttattttatctttt 240  Q
    |||| |||||||||||||||||||||||||| ||||||    
T  45071202 agcttatataaaaacaatttgactttattttgtctttt 45071165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #8
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 295
Target Start/End: Complemental strand, 1112775 - 1112735
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacagggtcta 295  Q
    ||||||||||||||||||| ||||| || ||||||||||||    
T  1112775 ctataagctgcaaattaagttgtttttctaaacagggtcta 1112735  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 212 - 240
Target Start/End: Complemental strand, 14482193 - 14482165
Alignment:
Q  212 aaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||||||||||||    
T  14482193 aaaaacaatttgactttattttatctttt 14482165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 28784870 - 28784902
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    |||| ||||||||||||||||||||||||||||    
T  28784870 atatcaaaacaatttgactttattttatctttt 28784902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 35; Significance: 0.0000000002; HSPs: 12)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 172 - 236
Target Start/End: Complemental strand, 34205267 - 34205206
Alignment:
Q  172 ttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatc 236  Q
    ||||||| ||||||||||||||||||||   |||| ||||||||| |||||||||||| ||||||    
T  34205267 ttcaagatagcttatgaaaacaacttat---agcttatataaaaataatttgactttactttatc 34205206  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 257 - 294
Target Start/End: Original strand, 11715018 - 11715055
Alignment:
Q  257 ataagctgcaaattaaggtgtttatccaaacagggtct 294  Q
    ||||||||||||||||| ||||||||||||||||||||    
T  11715018 ataagctgcaaattaagttgtttatccaaacagggtct 11715055  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 174 - 236
Target Start/End: Original strand, 18857444 - 18857503
Alignment:
Q  174 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatc 236  Q
    ||||| |||||||||||||| ||||||||   | ||| |||||||||||||||||||||||||    
T  18857444 caagacagcttatgaaaacagcttataga---ttatagaaaaacaatttgactttattttatc 18857503  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 290
Target Start/End: Original strand, 42573936 - 42573971
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacagg 290  Q
    ||||||||||||||||||| ||||||||||||||||    
T  42573936 ctataagctgcaaattaagctgtttatccaaacagg 42573971  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 255 - 293
Target Start/End: Complemental strand, 6593213 - 6593175
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacagggtc 293  Q
    |||||||||| |||||||| |||||||||||||||||||    
T  6593213 ctataagctgtaaattaagttgtttatccaaacagggtc 6593175  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 9202786 - 9202855
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||| | |||||||||||| ||||| |   || |||| |||||||||| |||||||||||||||||    
T  9202786 gttcttcaagataacttatgaaaacagcttattg---cttatatgaaaacaatttaactttattttatctttt 9202855  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #7
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 181 - 240
Target Start/End: Original strand, 10272482 - 10272538
Alignment:
Q  181 gcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||||   || |||  ||||||||||||||| ||||||||||||    
T  10272482 gcttatgaaaacaacttatag---cttatacgaaaacaatttgacttaattttatctttt 10272538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 203 - 240
Target Start/End: Original strand, 32969187 - 32969224
Alignment:
Q  203 agctcatataaaaacaatttgactttattttatctttt 240  Q
    |||| ||||||||| |||||||||||||||||||||||    
T  32969187 agcttatataaaaataatttgactttattttatctttt 32969224  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #9
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 256 - 288
Target Start/End: Complemental strand, 5559642 - 5559610
Alignment:
Q  256 tataagctgcaaattaaggtgtttatccaaaca 288  Q
    |||||||||||||||||| ||||||||||||||    
T  5559642 tataagctgcaaattaagttgtttatccaaaca 5559610  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 29845054 - 29845090
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacaggg 291  Q
    ||||||| ||||||||||| |||||||||||||||||    
T  29845054 ctataagttgcaaattaagttgtttatccaaacaggg 29845090  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Original strand, 38105020 - 38105056
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacaggg 291  Q
    |||||||||||||| |||| |||||||||||||||||    
T  38105020 ctataagctgcaaaataagttgtttatccaaacaggg 38105056  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 40534219 - 40534159
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||||||||||||||  |||| |||| |||| ||| ||| ||||||| |||||||    
T  40534219 agcttatgaaaacaacttatactagcttatatgaaaataatgtgattttatttcatctttt 40534159  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 35; Significance: 0.0000000002; HSPs: 16)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 2996599 - 2996538
Alignment:
Q  174 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 238  Q
    ||||| |||||||||||||||||||||    || ||||||||||||||||||| |||||||||||    
T  2996599 caagatagcttatgaaaacaacttataa---cttatataaaaacaatttgactgtattttatctt 2996538  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 34; E-Value: 0.0000000007
Query Start/End: Original strand, 169 - 240
Target Start/End: Complemental strand, 51630142 - 51630074
Alignment:
Q  169 ttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||||||||| |||||||||||| | |||||||   || |||| |||||||||| |||||||||||||||||    
T  51630142 ttcttcaagatagcttatgaaaatagcttatag---cttatatcaaaacaatttaactttattttatctttt 51630074  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 180 - 234
Target Start/End: Original strand, 7368105 - 7368157
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttatttta 234  Q
    |||||||| ||||||||||||  |||| |||| ||||||||||||||||||||||    
T  7368105 agcttatggaaacaacttata--agcttatatgaaaacaatttgactttatttta 7368157  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 256 - 291
Target Start/End: Complemental strand, 19039693 - 19039658
Alignment:
Q  256 tataagctgcaaattaaggtgtttatccaaacaggg 291  Q
    |||||||||||||||||| |||||||||||||||||    
T  19039693 tataagctgcaaattaagttgtttatccaaacaggg 19039658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 242 - 288
Target Start/End: Original strand, 20936357 - 20936404
Alignment:
Q  242 cataagtgctta-actataagctgcaaattaaggtgtttatccaaaca 288  Q
    |||||||||||| |||||||||||||||||||| | ||||||||||||    
T  20936357 cataagtgcttatactataagctgcaaattaagctctttatccaaaca 20936404  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 260 - 291
Target Start/End: Complemental strand, 46201307 - 46201276
Alignment:
Q  260 agctgcaaattaaggtgtttatccaaacaggg 291  Q
    ||||||||||||||||||||||||||||||||    
T  46201307 agctgcaaattaaggtgtttatccaaacaggg 46201276  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 255 - 294
Target Start/End: Complemental strand, 54214928 - 54214889
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacagggtct 294  Q
    ||||||||||||||||||| ||||||||||||||| ||||    
T  54214928 ctataagctgcaaattaagttgtttatccaaacagagtct 54214889  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 168 - 240
Target Start/End: Original strand, 47119003 - 47119072
Alignment:
Q  168 gttcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||| ||| |||||| |||||||||   |||| |||| |||||||||| ||||| |||||||||||    
T  47119003 gttcttcaagatagcatatgaatacaacttat---agcttatatgaaaacaatttaactttgttttatctttt 47119072  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 180 - 240
Target Start/End: Complemental strand, 30024726 - 30024663
Alignment:
Q  180 agcttatgaaaacaacttataga---agctcatataaaaacaatttgactttattttatctttt 240  Q
    ||||||||| ||||||||||||    |||| |||| |||||||||| |||||||||||||||||    
T  30024726 agcttatgacaacaacttatagttatagcttatatgaaaacaattttactttattttatctttt 30024663  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #10
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 180 - 238
Target Start/End: Original strand, 13949894 - 13949949
Alignment:
Q  180 agcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 238  Q
    |||||||  |||||||||||||   || |||| ||||||||||||||||||||||||||    
T  13949894 agcttatacaaacaacttatag---cttatatgaaaacaatttgactttattttatctt 13949949  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #11
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 244
Target Start/End: Original strand, 19429563 - 19429599
Alignment:
Q  208 atataaaaacaatttgactttattttatctttttcat 244  Q
    ||||||||||| |||||||||||||||||||| ||||    
T  19429563 atataaaaacagtttgactttattttatctttgtcat 19429599  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #12
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Original strand, 46013375 - 46013407
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  46013375 atataaaaacagtttgactttattttatctttt 46013407  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #13
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 208 - 240
Target Start/End: Complemental strand, 46247213 - 46247181
Alignment:
Q  208 atataaaaacaatttgactttattttatctttt 240  Q
    ||||||||||| |||||||||||||||||||||    
T  46247213 atataaaaacagtttgactttattttatctttt 46247181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #14
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 255 - 291
Target Start/End: Complemental strand, 47399447 - 47399411
Alignment:
Q  255 ctataagctgcaaattaaggtgtttatccaaacaggg 291  Q
    |||||||||||||| |||| |||||||||||||||||    
T  47399447 ctataagctgcaaactaagttgtttatccaaacaggg 47399411  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #15
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 170 - 240
Target Start/End: Complemental strand, 49219169 - 49219102
Alignment:
Q  170 tcttcaagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctttt 240  Q
    |||| |||| || |||||||||||||||||||   || |||| |||| |||||||||||||||||| ||||    
T  49219169 tctttaagatagtttatgaaaacaacttatag---cttatatgaaaataatttgactttattttatatttt 49219102  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #16
Raw Score: 29; E-Value: 0.0000007
Query Start/End: Original strand, 164 - 200
Target Start/End: Complemental strand, 52734839 - 52734803
Alignment:
Q  164 atatgttcttcaagagagcttatgaaaacaacttata 200  Q
    |||||||||||| || |||||||||||||||||||||    
T  52734839 atatgttcttcatgatagcttatgaaaacaacttata 52734803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0024 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: scaffold0024
Description:

Target: scaffold0024; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 174 - 238
Target Start/End: Complemental strand, 27602 - 27541
Alignment:
Q  174 caagagagcttatgaaaacaacttatagaagctcatataaaaacaatttgactttattttatctt 238  Q
    ||||| || |||||||||||||||||||    | |||| ||||||||||||||||||||||||||    
T  27602 caagatagtttatgaaaacaacttatagt---ttatatgaaaacaatttgactttattttatctt 27541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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