View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_18 (Length: 467)
Name: NF19266_low_18
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_18 |
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Alignment Details
Target: chr8 (Bit Score: 423; Significance: 0; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 423; E-Value: 0
Query Start/End: Original strand, 18 - 457
Target Start/End: Complemental strand, 32814970 - 32814535
Alignment:
| Q |
18 |
gatcttaaatcatttgttaggtgtctttgatagtgtttcatagttattgagctataggatgtttcaatgtatttgtgtgtcctgctttatgtagataatg |
117 |
Q |
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| T |
32814970 |
gatcttaaatcatttgttaggtgtctttgatagtgtttcatagttattgagctataggatgtttcaatgtatttgtgtgtcctgctttatgtagataatg |
32814871 |
T |
|
| Q |
118 |
ctttggtttctggatgtaaaatttgtgtttgtttgttctgaagcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatcagtt |
217 |
Q |
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||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32814870 |
ctttggtttctggatgtaaaatttgtgtttgtttgtt----agcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatcagtt |
32814775 |
T |
|
| Q |
218 |
gtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagttctgatgcaggtaataatgcttaaagaac |
317 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32814774 |
gtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagttctgatgcaggtaataatgcttaaagaac |
32814675 |
T |
|
| Q |
318 |
tcattttaaagctattttatggaaatagctgtttattgtgaaatttgcaactgtatttaaattgaaacttgtgttttgaataggagcctgtgatacctgg |
417 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
32814674 |
tcattttaaagctattttatggaaatagctgtttattgtgaaatttgcaactgtatttaaattgaaacttgtgttttgaataggagcctgtgatacctgg |
32814575 |
T |
|
| Q |
418 |
ttgtttccttcgtgcccgtgctattggattgatgcctatg |
457 |
Q |
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| T |
32814574 |
ttgtttccttcgtgcccgtgctattggattgatgcctatg |
32814535 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 39; E-Value: 0.0000000000007
Query Start/End: Original strand, 189 - 303
Target Start/End: Complemental strand, 8800261 - 8800147
Alignment:
| Q |
189 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
288 |
Q |
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|||||||||||||||| || || |||||||| ||||| ||||||||||||||||| || |||| || |||||||| | ||||| | |||||| | || |
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| T |
8800261 |
aggttgatcggattctgtattcgtcagttgtttatcctcataactatggttttatccctcgaactctatgtgaagacaatgatccactcgatgtcttggt |
8800162 |
T |
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| Q |
289 |
tctgatgcaggtaat |
303 |
Q |
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||| ||||||||||| |
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| T |
8800161 |
tctcatgcaggtaat |
8800147 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 61; Significance: 5e-26; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 157 - 301
Target Start/End: Original strand, 7986393 - 7986537
Alignment:
| Q |
157 |
gaagcaaaactaacaaatgggctgaataacttaggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctt |
256 |
Q |
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|||||| ||||||| ||||||| |||| ||||||||||||| |||||||||||||| |||||||| ||||| ||||| |||||||| ||| ||||| || |
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| T |
7986393 |
gaagcataactaactcatgggctaaataccttaggttgatcgtattctttactcatcggttgtctacccacacaactacggttttatcccacgaaccatt |
7986492 |
T |
|
| Q |
257 |
tgtgaagatgaagatcccttggatgtcctagttctgatgcaggta |
301 |
Q |
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|||||||| ||||| ||||||| || ||||||||||||||| |
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| T |
7986493 |
tgtgaagacagtgatcctatggatgttctggttctgatgcaggta |
7986537 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000002; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 189 - 302
Target Start/End: Original strand, 49126665 - 49126778
Alignment:
| Q |
189 |
aggttgatcggattctttactcatcagttgtctatccacataactatggttttattccaagaaccctttgtgaagatgaagatcccttggatgtcctagt |
288 |
Q |
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|||||||||| ||| | || || |||||||| ||||| ||||||||||||||||| || | || || |||||||| | ||||| | |||||||| || |
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| T |
49126665 |
aggttgatcgaattttgtattcttcagttgtttatcctcataactatggttttatccctcgtacactctgtgaagacaatgatccaattgatgtcctggt |
49126764 |
T |
|
| Q |
289 |
tctgatgcaggtaa |
302 |
Q |
| |
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||| |||||||||| |
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| T |
49126765 |
tctcatgcaggtaa |
49126778 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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