View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_2 (Length: 839)
Name: NF19266_low_2
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_2 |
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Alignment Details
Target: chr1 (Bit Score: 699; Significance: 0; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 699; E-Value: 0
Query Start/End: Original strand, 28 - 827
Target Start/End: Original strand, 50909376 - 50910153
Alignment:
| Q |
28 |
tgcttgcacacatagaaaatgtggtctccacttgtttgaacttgagattcagcatagagacgcatacactatggcagcatatttcaacgagaaaactgaa |
127 |
Q |
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| T |
50909376 |
tgcttgcacaca--gaaaatgtggtctcaacttgtttgaacttgagattcagcatagagacgcatacactatggcagcatatttcaacgagaaaagtgaa |
50909473 |
T |
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| Q |
128 |
tttcacgcattcgaatttcaaagtccggatgtgtaaaagtcttaaaaaatgtattttacacaaagattttgaaatttgaatatgttaaaaattatgaatt |
227 |
Q |
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| T |
50909474 |
tttcacgcattcgaatttcaaagtccggatgtgtaaaagtcttaaaaaatgtattttacacaaagattttgaaatttgaatatgttaaaaattatgaatt |
50909573 |
T |
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| Q |
228 |
tgcactttgtcacaatagaagtttgaactatatatatggcaccttcaaactccaaaatcaagatgtgtaagaattaagattgatttataaatcaattttg |
327 |
Q |
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| T |
50909574 |
tgcactttgtcacaatagaagtttgaactatatatatggcaccttcaaactccaaaatcaagatgtgtaagaattaagattgatttataaatcaatttgg |
50909673 |
T |
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| Q |
328 |
ggggcgcacgagatgtaaggggtggaagaaaaatttcatgtcgttgtgtcatagatttatttaacttgaaaataggctaaacacatccacgattaaaccc |
427 |
Q |
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||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |
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| T |
50909674 |
gggacgcacgagatgtaaggggtggaagaaaaatttcatgtcgttgtgtcatagattta----acttgaaaataggctaaa----------------ccc |
50909753 |
T |
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| Q |
428 |
aacccaattcaaaagagacataaacaaaagtacacctacgctacgcaaggtcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatt |
527 |
Q |
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| T |
50909754 |
aacccaattcaaaagagacataaacaaaagtacacctacgctacgcaagctcttgctaaagtgtgagtaaatttgaaaatatggctactctaatacaatt |
50909853 |
T |
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| Q |
528 |
tagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatag |
627 |
Q |
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| T |
50909854 |
tagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctatctatgtagtattgttggaacaagagttagaaaaacatag |
50909953 |
T |
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| Q |
628 |
tgttccaacaagtattaatctattagacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctt |
727 |
Q |
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| T |
50909954 |
tgttccaacaagtattaatctattagacgcgtctttactgctttgggatggctaatacttaattgttgctggaacaggagccagttcttccaggttcctt |
50910053 |
T |
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| Q |
728 |
tcccttacgaagttcagggcgagaaagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgctg |
827 |
Q |
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| T |
50910054 |
tcccttacgaagttcagggcgagaaagatgacaagatattcgctgtctgtgcatgaaattcagggcaagaaagacgacaagatattcgctgtctgtgctg |
50910153 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 57; E-Value: 2e-23
Query Start/End: Original strand, 631 - 729
Target Start/End: Original strand, 50901041 - 50901143
Alignment:
| Q |
631 |
tccaacaagtattaatctattagacgcgtctt---tactgctttgggatggctaatacttaattgttgctggaaca-ggagccagttcttccaggttcct |
726 |
Q |
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|||| ||||||||||||||||||| | ||||| ||||||||||||||||||||||||||||||||| ||||||| |||||| ||||||||||||| || |
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| T |
50901041 |
tccaccaagtattaatctattagatgtgtcttctttactgctttgggatggctaatacttaattgttggtggaacagggagccggttcttccaggttgct |
50901140 |
T |
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| Q |
727 |
ttc |
729 |
Q |
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||| |
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| T |
50901141 |
ttc |
50901143 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 47; E-Value: 2e-17
Query Start/End: Original strand, 489 - 591
Target Start/End: Original strand, 43548535 - 43548637
Alignment:
| Q |
489 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaatacgatgacttcatctat |
588 |
Q |
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| T |
43548535 |
tgtgagtaaatttcaaaatattactcctctaatacaatctgacaataatgcatggaaacaattcataaagaggatcaagtaagaagtcgacttcatctat |
43548634 |
T |
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| Q |
589 |
cta |
591 |
Q |
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| T |
43548635 |
cta |
43548637 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 43; E-Value: 0.000000000000005
Query Start/End: Original strand, 489 - 571
Target Start/End: Original strand, 29368771 - 29368852
Alignment:
| Q |
489 |
tgtgagtaaatttgaaaatatggctactctaatacaatttagcaataatgcatggtaataattcaaaaagaggatcaagtaat |
571 |
Q |
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| T |
29368771 |
tgtgagtaaattttaaaa-atggctactgtaatacaatttcacaataatacatggtaacacttcaaaaagaggatgaagtaat |
29368852 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 33; E-Value: 0.000000005
Query Start/End: Original strand, 739 - 779
Target Start/End: Original strand, 43548853 - 43548893
Alignment:
| Q |
739 |
gttcagggcgagaaagatgacaagatattcgctgtctgtgc |
779 |
Q |
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| T |
43548853 |
gttcagggcgagaaagatgacaagataattgctgtctgtgc |
43548893 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 31; E-Value: 0.00000008
Query Start/End: Original strand, 741 - 779
Target Start/End: Original strand, 50901265 - 50901303
Alignment:
| Q |
741 |
tcagggcgagaaagatgacaagatattcgctgtctgtgc |
779 |
Q |
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| T |
50901265 |
tcagggcgagaaagatgacaagataattgctgtctgtgc |
50901303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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