View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_20 (Length: 448)
Name: NF19266_low_20
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_20 |
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Alignment Details
Target: chr7 (Bit Score: 413; Significance: 0; HSPs: 3)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 413; E-Value: 0
Query Start/End: Original strand, 1 - 437
Target Start/End: Complemental strand, 38707823 - 38707388
Alignment:
| Q |
1 |
gaccagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgt |
100 |
Q |
| |
|
|||||||||||| ||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38707823 |
gaccagttggtttttgaggtcttcttaaaccaactctc-gatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgt |
38707725 |
T |
|
| Q |
101 |
gcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38707724 |
gcaatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtc |
38707625 |
T |
|
| Q |
201 |
tggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagattttttattgcattttccaccttttcaagatcatac |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38707624 |
tggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagattttttattgcattttccaccttttcaagatcatac |
38707525 |
T |
|
| Q |
301 |
cacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttcagccttcgaatctcatcaatcctctctttctctttgttatactgcatcttc |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38707524 |
cacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgtttcagccttcaaatctcatcaatcctctctttctctttgttatactgcatcttc |
38707425 |
T |
|
| Q |
401 |
agatgttgaagtttgtctcttaaattttcaagttctt |
437 |
Q |
| |
|
|||||| |||| ||||||||||||||||||||||||| |
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|
| T |
38707424 |
agatgtcgaagcttgtctcttaaattttcaagttctt |
38707388 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 179; E-Value: 2e-96
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 10046030 - 10045741
Alignment:
| Q |
2 |
accagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtg |
101 |
Q |
| |
|
||||||||||||||| ||||||| || |||| ||||| || || |||||||||||||| | | |||||||||||||||||||||||||||||||| | || |
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|
| T |
10046030 |
accagttggttgttgtggtcttcctagaccagctctc-gaccttactacagccccagcgacagctttaactgcttggtcttgtcccacaactctagtatg |
10045932 |
T |
|
| Q |
102 |
caatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtct |
201 |
Q |
| |
|
|||| |||| |||||||||||||||||||||||||||||||| ||| ||||||||| ||| |||||||||||||||||||||||| ||| || || ||| |
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|
| T |
10045931 |
caatctgtctccaagtccaaccaacctttctttatcattttggcctaaacgagtcactggtataccggtccatcggctaacaacctcagcaatttgatct |
10045832 |
T |
|
| Q |
202 |
ggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagattttttattgcattttccaccttttcaa |
292 |
Q |
| |
|
||||||||||||||||||||||||||||| ||| ||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||| |
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|
| T |
10045831 |
ggtccaacagtttctgtcagcatcaagttctcacctttgttcccatcagtgctaccttcaagattttttattgcattttccacctcttcaa |
10045741 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 97; E-Value: 2e-47
Query Start/End: Original strand, 292 - 437
Target Start/End: Complemental strand, 10045708 - 10045561
Alignment:
| Q |
292 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtat--gtttcagccttcgaatctcatcaatcctctctttctctttgttat |
389 |
Q |
| |
|
|||||||||| |||||||||||| ||||||||||||||||||||||||||| | ||||||| ||||||||||||||||||||||||||||||||| ||| |
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|
| T |
10045708 |
agatcataccgcctctcagcctcttgtagtgcaaagaggagctcttcacgtttctgtttcagacttcgaatctcatcaatcctctctttctctttgatat |
10045609 |
T |
|
| Q |
390 |
actgcatcttcagatgttgaagtttgtctcttaaattttcaagttctt |
437 |
Q |
| |
|
||| |||||||||| | ||||| |||||||||||||| |||||||||| |
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|
| T |
10045608 |
acttcatcttcagaggctgaagcttgtctcttaaattgtcaagttctt |
10045561 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 127; Significance: 2e-65; HSPs: 2)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 127; E-Value: 2e-65
Query Start/End: Original strand, 2 - 292
Target Start/End: Complemental strand, 45467883 - 45467594
Alignment:
| Q |
2 |
accagttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtg |
101 |
Q |
| |
|
||||||||||||||| ||||||| ||||||| |||| ||||||| ||||||| |||||| | | ||||| ||||||||||||||||| |||||| |||| |
|
|
| T |
45467883 |
accagttggttgttggggtcttcctaaaccagctctt-gatctcaatacagcctcagcaacagcattaaccgcttggtcttgtcccacgactctagtgtg |
45467785 |
T |
|
| Q |
102 |
caatttgtcaccaagtccaaccaacctttctttatcattttgcactagacgagtcaccggtgtaccggtccatcggctaacaaccttagctatatggtct |
201 |
Q |
| |
|
|| | ||||||||||||||||||||||| |||| |||||||| | || | |||||| ||| |||| ||||||||||||||||||| ||||| ||||| |
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|
| T |
45467784 |
cagtctgtcaccaagtccaaccaaccttgctttctcattttggccgagcctagtcactggtataccagtccatcggctaacaacctcggctatttggtcc |
45467685 |
T |
|
| Q |
202 |
ggtccaacagtttctgtcagcatcaagttatcatctttgtttccatcagtgctaccttcaagattttttattgcattttccaccttttcaa |
292 |
Q |
| |
|
|||||||| ||||| |||| ||| ||||| ||||| |||| |||||||||||||||||||||||||| |||||| ||||||||| ||||| |
|
|
| T |
45467684 |
ggtccaactgtttccgtcaacattaagttctcatccgtgttcccatcagtgctaccttcaagatttttaattgcagtttccacctcttcaa |
45467594 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 84; E-Value: 9e-40
Query Start/End: Original strand, 292 - 420
Target Start/End: Complemental strand, 45467561 - 45467431
Alignment:
| Q |
292 |
agatcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctctttgttat |
389 |
Q |
| |
|
|||||||||| |||||| ||||||||||||||||||||||||||||||||| | | |||||||||||||||||||||||||||||||||||||| ||| |
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|
| T |
45467561 |
agatcataccgcctctctgcctcctgtagtgcaaagaggagctcttcacgtttctgcttcagccttcgaatctcatcaatcctctctttctctttactat |
45467462 |
T |
|
| Q |
390 |
actgcatcttcagatgttgaagtttgtctct |
420 |
Q |
| |
|
||| |||||||||| ||||||| |||||||| |
|
|
| T |
45467461 |
acttcatcttcagaggttgaagcttgtctct |
45467431 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 38; Significance: 0.000000000003; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 6 - 141
Target Start/End: Original strand, 43064782 - 43064913
Alignment:
| Q |
6 |
gttggttgttgaggtcttcttaaaccaactctcagatctcactacagccccagcaaaaactttaactgcttggtcttgtcccacaactctactgtgcaat |
105 |
Q |
| |
|
||||||||||||| ||||| ||||||| |||| ||||||| ||||||| |||||| ||| |||| || ||||| |||||| ||||| ||||||||| |
|
|
| T |
43064782 |
gttggttgttgagctcttcctaaaccagctct-tgatctcaatacagcctcagcaagaacattaattgtttggtattgtcctgcaact---ctgtgcaat |
43064877 |
T |
|
| Q |
106 |
ttgtcaccaagtccaaccaacctttctttatcattt |
141 |
Q |
| |
|
| |||| |||||||| ||| |||||||| |||||| |
|
|
| T |
43064878 |
ctatcacaaagtccaatcaatctttctttctcattt |
43064913 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 38; Significance: 0.000000000003; HSPs: 3)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 294 - 384
Target Start/End: Original strand, 42450316 - 42450408
Alignment:
| Q |
294 |
atcataccacctctcagcctcctgtagtgcaaagaggagctcttcacgtatgt--ttcagccttcgaatctcatcaatcctctctttctcttt |
384 |
Q |
| |
|
||||| || |||||||||||||||||| | |||| |||||||||||| | | ||||||||| ||||||||||||||||| |||||||||| |
|
|
| T |
42450316 |
atcattccgcctctcagcctcctgtagagacaagataagctcttcacgtttctgcttcagcctttgaatctcatcaatcctcactttctcttt |
42450408 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 70 - 142
Target Start/End: Original strand, 742815 - 742887
Alignment:
| Q |
70 |
actgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcatttt |
142 |
Q |
| |
|
|||||||| |||||||||||||||||| | ||||| ||||||||| ||||| ||||||||||| ||||||| |
|
|
| T |
742815 |
actgcttgatcttgtcccacaactctattatgcaacctgtcaccaattccaagaaacctttctttctcatttt |
742887 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #3
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 70 - 228
Target Start/End: Original strand, 42450071 - 42450229
Alignment:
| Q |
70 |
actgcttggtcttgtcccacaactctactgtgcaatttgtcaccaagtccaaccaacctttctttatcattttgcact-agacgagtcaccggtgtaccg |
168 |
Q |
| |
|
||||| || ||||||||||| ||||| |||| || ||||||||||||||| ||||||||||| ||||||| |||| || || | ||| ||| |||| |
|
|
| T |
42450071 |
actgcatgatcttgtcccactactcttttgtgtaacctgtcaccaagtccaagaaacctttctttctcatttt-cactaagtcgggacactggtataccc |
42450169 |
T |
|
| Q |
169 |
gtccatcggctaacaaccttagctatatggtctggtccaacagtttctgtcagcatcaag |
228 |
Q |
| |
|
||| || ||||||||||| | |||| |||||||| ||||||||| ||||| ||||||| |
|
|
| T |
42450170 |
gtcaataggctaacaaccaaacctattaggtctggttcaacagtttttgtcaacatcaag |
42450229 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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