View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_21 (Length: 446)

Name: NF19266_low_21
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_21
NF19266_low_21
[»] chr3 (10 HSPs)
chr3 (18-433)||(53425204-53425622)
chr3 (189-406)||(53309221-53309438)
chr3 (208-418)||(53432360-53432570)
chr3 (252-418)||(48372155-48372324)
chr3 (208-418)||(26097736-26097946)
chr3 (254-341)||(53321068-53321155)
chr3 (126-158)||(26098002-26098034)
chr3 (129-158)||(48372032-48372061)
chr3 (126-171)||(53309456-53309501)
chr3 (126-158)||(53432620-53432652)
[»] chr1 (1 HSPs)
chr1 (366-406)||(140302-140342)


Alignment Details
Target: chr3 (Bit Score: 401; Significance: 0; HSPs: 10)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 401; E-Value: 0
Query Start/End: Original strand, 18 - 433
Target Start/End: Complemental strand, 53425622 - 53425204
Alignment:
Q  18 tctctcacataaatcgagtcaagccaacctgttatatcctatacattatttctatgtttacgcttatgaggtccattagaataaaagctgccatgaattt 117  Q
    ||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425622 tctctcacataaatcgagtcaagccaacctgttatatcccatacattatttctatgtttacgcttatgaggtccattagaataaaagctgccatgaattt 53425523  T
Q  118 gtttttctatttttaggaagataataggagcaaggtattacgctgatcctgatgagtacgatga---aacggagaacacggtaagggatagaaatggaca 214  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||   |||||||||||||||||||||||||||||||||    
T  53425522 gtttttctatttttaggaagataataggagcaaggtattacgctgatcctgatgagtacgatgatgaaacggagaacacggtaagggatagaaatggaca 53425423  T
Q  215 tgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcg 314  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425422 tgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcg 53425323  T
Q  315 aggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgtactttcac 414  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  53425322 aggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgtactttcac 53425223  T
Q  415 tctcaattggtccatattc 433  Q
    |||||||||||||||||||    
T  53425222 tctcaattggtccatattc 53425204  T

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Target: chr3; HSP #2
Raw Score: 82; E-Value: 1e-38
Query Start/End: Original strand, 189 - 406
Target Start/End: Complemental strand, 53309438 - 53309221
Alignment:
Q  189 aacacggtaagggatagaaatggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcaggga 288  Q
    |||||||||||||||| | |||||||||| ||||| ||||| || || || ||||||||  | ||||||||||||||||| |||| ||| || | |||||    
T  53309438 aacacggtaagggatacatatggacatggtacccatacagcatcgacagcagcagggaatgtcgtgagtggtgcatcatactatggtcttgcagaaggga 53309339  T
Q  289 cagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccat 388  Q
    ||||||||||||||||  |||| |||||||| || |||||||||||||| | ||||  ||||| ||||||||| || ||||| || |||||| |||||||    
T  53309338 cagcaaaaggtgggtcctctgagtcgaggttagcgatttacaaagtgtgatttccttcctgttatggctctgggatccttgcagcgttcgacaatgccat 53309239  T
Q  389 ttatgatggagttgatgt 406  Q
    ||  |||||||| |||||    
T  53309238 tttcgatggagtagatgt 53309221  T

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Target: chr3; HSP #3
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 208 - 418
Target Start/End: Complemental strand, 53432570 - 53432360
Alignment:
Q  208 atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc 307  Q
    |||| ||||| ||||||||||| || || || || |||||  ||||||||||||||||||| | || ||| |||||||||||  ||||||| ||||| ||    
T  53432570 atggtcatggaacccacacagcatcgaccgcggctgggaatgttgtgagtggtgcatcatactttggtcttgcggcagggacgacaaaaggcgggtcccc 53432471  T
Q  308 tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgta 407  Q
    |||||||||||||||||||||||||||||||  |      || || ||||| | ||| ||||| |||||||| ||||| |||| |||||||||||||||     
T  53432470 tgaatcgaggttggcaatttacaaagtgtgcaatatgttttgctcaggctcggccatccttgcggcattcgatgatgcaatttctgatggagttgatgtg 53432371  T
Q  408 ctttcactctc 418  Q
    |||||||||||    
T  53432370 ctttcactctc 53432360  T

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Target: chr3; HSP #4
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 252 - 418
Target Start/End: Original strand, 48372155 - 48372324
Alignment:
Q  252 gtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgt---gctctcctggct 348  Q
    ||||||||||||||||| |||| |||||||| ||||| |||||||||||| || ||||||||||||||||| |||||||||||||   ||  |  ||| |    
T  48372155 gtgagtggtgcatcatactatggtctcgcggaagggatagcaaaaggtggttcccctgaatcgaggttggcgatttacaaagtgtgcagcaatattggtt 48372254  T
Q  349 gttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgtactttcactctc 418  Q
    | |||||||||| ||| ||||| || || |||||||| |||| ||||||||||||||| ||||| |||||    
T  48372255 gctctggctctgccatacttgcggcgtttgacgatgcaatttctgatggagttgatgtgctttcgctctc 48372324  T

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Target: chr3; HSP #5
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 208 - 418
Target Start/End: Complemental strand, 26097946 - 26097736
Alignment:
Q  208 atggacatgggacccacacagcttcaacggctgcagggaactttgtgagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcc 307  Q
    |||| ||||| ||||||||||| ||||| || || |||||| | ||||||||||||||||| | || ||| || ||||| || ||||||||||| || ||    
T  26097946 atgggcatggaacccacacagcgtcaaccgcggcggggaacgtcgtgagtggtgcatcatactttggtcttgcagcaggaacggcaaaaggtggatcccc 26097847  T
Q  308 tgaatcgaggttggcaatttacaaagtgtgctctcctggctgttctggctctggcatgcttgctgcattcgacgatgccatttatgatggagttgatgta 407  Q
     | ||| |||||| |||||||||||||||||     ||| || |||||||||| ||| ||||| || ||||||||||| |||| ||| ||||||||| ||    
T  26097846 cggatcaaggttgtcaatttacaaagtgtgcaactttggttgctctggctctgccatccttgcggctttcgacgatgcaatttctgacggagttgatata 26097747  T
Q  408 ctttcactctc 418  Q
    |||||| ||||    
T  26097746 ctttcagtctc 26097736  T

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Target: chr3; HSP #6
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 254 - 341
Target Start/End: Complemental strand, 53321155 - 53321068
Alignment:
Q  254 gagtggtgcatcatattatgatctcgcggcagggacagcaaaaggtgggtctcctgaatcgaggttggcaatttacaaagtgtgctct 341  Q
    ||||||||||||||| || | ||| ||   ||||||| ||||||| ||||||||| |||| |||||||| ||||||||||||||||||    
T  53321155 gagtggtgcatcatactacggtcttgcaaaagggacatcaaaaggggggtctcctcaatcaaggttggcgatttacaaagtgtgctct 53321068  T

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Target: chr3; HSP #7
Raw Score: 33; E-Value: 0.000000003
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 26098034 - 26098002
Alignment:
Q  126 atttttaggaagataataggagcaaggtattac 158  Q
    |||||||||||||||||||||||||||||||||    
T  26098034 atttttaggaagataataggagcaaggtattac 26098002  T

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Target: chr3; HSP #8
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 129 - 158
Target Start/End: Original strand, 48372032 - 48372061
Alignment:
Q  129 tttaggaagataataggagcaaggtattac 158  Q
    ||||||||||||||||||||||||||||||    
T  48372032 tttaggaagataataggagcaaggtattac 48372061  T

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Target: chr3; HSP #9
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 171
Target Start/End: Complemental strand, 53309501 - 53309456
Alignment:
Q  126 atttttaggaagataataggagcaaggtattacgctgatcctgatg 171  Q
    ||||||||||||||||| ||||||||||||||| || | |||||||    
T  53309501 atttttaggaagataatcggagcaaggtattaccctaaccctgatg 53309456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #10
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 158
Target Start/End: Complemental strand, 53432652 - 53432620
Alignment:
Q  126 atttttaggaagataataggagcaaggtattac 158  Q
    |||||||||||||||||||||||||| ||||||    
T  53432652 atttttaggaagataataggagcaagatattac 53432620  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 366 - 406
Target Start/End: Complemental strand, 140342 - 140302
Alignment:
Q  366 cttgctgcattcgacgatgccatttatgatggagttgatgt 406  Q
    ||||||||||| || ||||||||| ||||||||||||||||    
T  140342 cttgctgcatttgatgatgccattgatgatggagttgatgt 140302  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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