View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_23 (Length: 435)

Name: NF19266_low_23
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_23
NF19266_low_23
[»] chr2 (27 HSPs)
chr2 (19-425)||(39215487-39215894)
chr2 (22-398)||(39161724-39162104)
chr2 (22-398)||(39207090-39207470)
chr2 (217-392)||(39369996-39370172)
chr2 (24-381)||(39388918-39389281)
chr2 (237-356)||(39192439-39192558)
chr2 (237-356)||(39198119-39198238)
chr2 (25-192)||(39192266-39192436)
chr2 (25-192)||(39197946-39198116)
chr2 (237-398)||(39222767-39222929)
chr2 (238-425)||(39459107-39459295)
chr2 (238-425)||(39473409-39473597)
chr2 (90-192)||(39222932-39223037)
chr2 (241-415)||(39397852-39398027)
chr2 (217-356)||(39414761-39414900)
chr2 (241-356)||(39468264-39468379)
chr2 (22-159)||(39370254-39370394)
chr2 (268-356)||(39137807-39137895)
chr2 (26-163)||(39381275-39381412)
chr2 (237-352)||(39381510-39381625)
chr2 (238-353)||(39421832-39421947)
chr2 (304-425)||(39152439-39152561)
chr2 (118-163)||(39421688-39421733)
chr2 (257-355)||(39494461-39494559)
chr2 (126-163)||(39468448-39468485)
chr2 (31-84)||(39223101-39223154)
chr2 (126-170)||(39459387-39459431)
[»] chr6 (2 HSPs)
chr6 (241-398)||(16113181-16113339)
chr6 (126-163)||(16113441-16113478)
[»] chr7 (2 HSPs)
chr7 (268-356)||(19807757-19807845)
chr7 (66-162)||(19807963-19808059)
[»] chr5 (2 HSPs)
chr5 (22-163)||(33561135-33561281)
chr5 (118-158)||(17059602-17059642)
[»] chr8 (1 HSPs)
chr8 (32-147)||(45342187-45342305)


Alignment Details
Target: chr2 (Bit Score: 396; Significance: 0; HSPs: 27)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 396; E-Value: 0
Query Start/End: Original strand, 19 - 425
Target Start/End: Complemental strand, 39215894 - 39215487
Alignment:
Q  19 acaaagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtatt 118  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215894 acaaagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtatt 39215795  T
Q  119 gaaactctttcaataaactagatgaataagaacatttacccgattgtgtttcttcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaa 218  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215794 gaaactctttcaataaactagatgaataagaacatttacccgattgtgtttcttcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaa 39215695  T
Q  219 ttttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaac 318  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  39215694 ttttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaac 39215595  T
Q  319 tcaagttctttccaccgtccttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaaccc 417  Q
    ||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||    
T  39215594 tcaagttctttccaccgtccttcaaattgcttctcttttgattcaaagctctcaacttgtctttcaaattgcttcttttttaaactgagctccttaaccc 39215495  T
Q  418 ggcctttg 425  Q
    ||||||||    
T  39215494 ggcctttg 39215487  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 22 - 398
Target Start/End: Complemental strand, 39162104 - 39161724
Alignment:
Q  22 aagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaa 121  Q
    |||||||| ||||||||||||| ||||||  | |||||| || || ||||||| || |  ||||| | ||||||||||||| |||||| ||| || | ||    
T  39162104 aagacatacaacattaacatgagtaaaaacgtgtttaaaaaattaagtagatcaggattcaaaaaatatcatcatcattaaaaggaacagttataataaa 39162005  T
Q  122 actctttcaataaactagatgaataagaacatttacccgattgtgtttcttca---atatattttttccttgacccaagcttcgtcggtcgtaaatcgaa 218  Q
    | ||||||||||| ||||||||| ||||||||||||| |||| | |||| |||   |||||||||||||||||| || ||| | |  || ||  ||| ||    
T  39162004 attctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctcctttagttgtccatcaaa 39161905  T
Q  219 ttttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaac 318  Q
    ||| |||| |||| ||||||||||||||||||||||| |||| ||||| |||||||| |||| ||||||  | | |||||||| ||||| ||||||   |    
T  39161904 tttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactctttcgtc 39161805  T
Q  319 tcaagttctttccaccgtccttcaaattgcttct-ctttgattcaaagctctcaacttggctttcaaattgcttctttttt 398  Q
    || ||||| |||||||||||||||||||| ||||  |||||||  |||  ||||||||| |||||||| ||||| ||||||    
T  39161804 tccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttatttttt 39161724  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 103; E-Value: 4e-51
Query Start/End: Original strand, 22 - 398
Target Start/End: Original strand, 39207090 - 39207470
Alignment:
Q  22 aagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaa 121  Q
    |||||||| ||||||||||||| ||||||  | |||||| || || ||||||| || |  ||||| | ||||||||||||| |||||| ||| || | ||    
T  39207090 aagacatacaacattaacatgagtaaaaacgtgtttaaaaaattaagtagatcaggattcaaaaaatatcatcatcattaaaaggaacagttataataaa 39207189  T
Q  122 actctttcaataaactagatgaataagaacatttacccgattgtgtttcttca---atatattttttccttgacccaagcttcgtcggtcgtaaatcgaa 218  Q
    | ||||||||||| ||||||||| ||||||||||||| |||| | |||| |||   |||||||||||||||||| || ||| | |  || ||  ||| ||    
T  39207190 attctttcaataatctagatgaagaagaacatttaccggattctttttcctcatcaatatattttttccttgactcaggctcctttagttgtccatcaaa 39207289  T
Q  219 ttttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaac 318  Q
    ||| |||| |||| ||||||||||||||||||||||| |||| ||||| |||||||| |||| ||||||  | | |||||||| ||||| ||||||   |    
T  39207290 tttattcatctttgacttaggatccttgacttgtccttcaaattgcttttcttttaagttgagctccttctcatttactttgagcttatactctttcgtc 39207389  T
Q  319 tcaagttctttccaccgtccttcaaattgcttct-ctttgattcaaagctctcaacttggctttcaaattgcttctttttt 398  Q
    || ||||| |||||||||||||||||||| ||||  |||||||  |||  ||||||||| |||||||| ||||| ||||||    
T  39207390 tccagttcattccaccgtccttcaaattgtttctgttttgatttgaagtcctcaacttgtctttcaaaatgcttatttttt 39207470  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 217 - 392
Target Start/End: Complemental strand, 39370172 - 39369996
Alignment:
Q  217 aattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctctttta 316  Q
    ||||| |||| |||| ||| | || |||||||||||| ||||||||||||||||||||| | ||||||||| ||||| ||| ||||||| ||||||||||    
T  39370172 aatttattcatctttgactcaagacccttgacttgtcttccaaactgcttctcttttaattcgaactccttcacctgcactatgaacttgttctctttta 39370073  T
Q  317 actcaagttctttccaccgtccttcaaattgcttctcttt-gattcaaagctctcaacttggctttcaaattgcttc 392  Q
    |||||||||||||||||||||||||||||||||| ||||| ||||  |||  ||| |||||| ||||||||||||||    
T  39370072 actcaagttctttccaccgtccttcaaattgcttttctttcgatttgaagtgctcgacttgggtttcaaattgcttc 39369996  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 83; E-Value: 4e-39
Query Start/End: Original strand, 24 - 381
Target Start/End: Original strand, 39388918 - 39389281
Alignment:
Q  24 gacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaat--tgtcatcatcattaagaggaaccgttgtattgaa 121  Q
    |||||| ||||||||||||||||||||  ||| ||   || || |||||||  | ||||||||   | |||||||||||||||||||| ||||||   ||    
T  39388918 gacatacaacattaacatgattaaaaacgtttctatggaattaagtagatcaagctataaaaaaaatatcatcatcattaagaggaacagttgtaaaaaa 39389017  T
Q  122 actctttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttccttgacccaagcttcgtcggtcgtaaatcgaa 218  Q
    | |||||||||||||| |||||||||||||||||||| |||| | ||||    |||| |||||||||||||||| |  ||| | |   | ||  ||| ||    
T  39389018 attctttcaataaactggatgaataagaacatttaccggattctttttccccatcaaaatattttttccttgactcgggctcctttatttgtccatcaaa 39389117  T
Q  219 ttttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaac 318  Q
    ||| |||| |||| ||| |||||| |||||||| ||| |||||||||| |||||||| |||| |||||| |||| |||||||||||||| |||||| |||    
T  39389118 tttattcagctttgactcaggatcgttgacttgcccttcaaactgcttttcttttaagttgagctccttcacctttactttgaacttatactctttcaac 39389217  T
Q  319 tcaagttctttccaccgtccttcaaattgcttctc-tttgattcaaagctctcaacttggcttt 381  Q
    || ||||| ||||| |||| || |||| ||| ||| |||||||  |||  ||||||||||||||    
T  39389218 tccagttcgttccatcgtcttttaaatcgctgctcttttgatttgaagtcctcaacttggcttt 39389281  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #6
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 39192439 - 39192558
Alignment:
Q  237 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 336  Q
    ||||||||||||| ||||| |||||||||| |||||||| |||| |||||| |||| | |||||||||||||||||||| ||||||||||  |||| |||    
T  39192439 aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt 39192538  T
Q  337 ccttcaaattgcttctcttt 356  Q
    ||||| ||||||||||||||    
T  39192539 ccttctaattgcttctcttt 39192558  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #7
Raw Score: 68; E-Value: 3e-30
Query Start/End: Original strand, 237 - 356
Target Start/End: Original strand, 39198119 - 39198238
Alignment:
Q  237 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 336  Q
    ||||||||||||| ||||| |||||||||| |||||||| |||| |||||| |||| | |||||||||||||||||||| ||||||||||  |||| |||    
T  39198119 aggatccttgactagtccttcaaactgcttttcttttaagttgagctccttcacctttgctttgaacttattctcttttgactcaagttcactccatcgt 39198218  T
Q  337 ccttcaaattgcttctcttt 356  Q
    ||||| ||||||||||||||    
T  39198219 ccttctaattgcttctcttt 39198238  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #8
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 39192266 - 39192436
Alignment:
Q  25 acataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaact 124  Q
    ||||| ||||||||||||||||||||| |||||||| || || |||||||  |||||||||| | |||||||||||||||||||  |||| | ||||| |    
T  39192266 acatagaacattaacatgattaaaaatgtttttaaagaattaagtagatcatgttataaaaaatatcatcatcattaagaggaatagttgcaatgaaatt 39192365  T
Q  125 ctttcaataaactagatgaataagaacatttacccgattgtgtt---tcttcaatatattttttccttgac 192  Q
    || ||||||||  ||||||||||| ||||||||| |||| | ||   || |||||||| ||||||||||||    
T  39192366 ctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatactttttccttgac 39192436  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #9
Raw Score: 65; E-Value: 2e-28
Query Start/End: Original strand, 25 - 192
Target Start/End: Original strand, 39197946 - 39198116
Alignment:
Q  25 acataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaact 124  Q
    ||||| ||||||||||||||||||||| |||||||| || || |||||||  |||||||||| | |||||||||||||||||||  |||| | ||||| |    
T  39197946 acatagaacattaacatgattaaaaatgtttttaaagaattaagtagatcatgttataaaaaatatcatcatcattaagaggaatagttgcaatgaaatt 39198045  T
Q  125 ctttcaataaactagatgaataagaacatttacccgattgtgtt---tcttcaatatattttttccttgac 192  Q
    || ||||||||  ||||||||||| ||||||||| |||| | ||   || |||||||| ||||||||||||    
T  39198046 ctgtcaataaataagatgaataagcacatttacctgattctttttcctcatcaatatactttttccttgac 39198116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #10
Raw Score: 63; E-Value: 3e-27
Query Start/End: Original strand, 237 - 398
Target Start/End: Complemental strand, 39222929 - 39222767
Alignment:
Q  237 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 336  Q
    ||||||||||||||||||| |||||  ||| ||||| || |||| |||||| |||| | |||||||||||||||||| | |||||||||  ||||| |||    
T  39222929 aggatccttgacttgtccttcaaaccacttttctttgaagttgagctccttcacctttgctttgaacttattctcttctgactcaagtttattccatcgt 39222830  T
Q  337 ccttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttctttttt 398  Q
     |||||||||||||||| ||||||| |||   ||| ||||||||||| || ||||||||||||    
T  39222829 tcttcaaattgcttctcttttgatttaaactcctcgacttggctttcgaaatgcttctttttt 39222767  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #11
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 238 - 425
Target Start/End: Complemental strand, 39459295 - 39459107
Alignment:
Q  238 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 337  Q
    |||||||||||||||||| |||| ||||| ||||||||||||| ||| || ||  |||||||||||||||||||||     || | |||||||| | ||     
T  39459295 ggatccttgacttgtccttcaaattgcttgtcttttaacttgagctctttcactagtactttgaacttattctcttcagcatcgaattctttccgctgtt 39459196  T
Q  338 cttcaaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttg 425  Q
    |||||||||||||||| ||| |||  |||  |||||  |||||||||||||||||||||||| || |||||| ||||||| | ||||||    
T  39459195 cttcaaattgcttctcttttaatttgaagtcctcaaactggctttcaaattgcttcttttttgaattgagctgcttaacctgacctttg 39459107  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #12
Raw Score: 61; E-Value: 5e-26
Query Start/End: Original strand, 238 - 425
Target Start/End: Original strand, 39473409 - 39473597
Alignment:
Q  238 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 337  Q
    ||||||| ||||| |||| ||| ||||||||||||||||||||    ||| ||  ||||||||||||||||||||||| |||| ||||||||||| |||     
T  39473409 ggatcctcgacttctccttcaacctgcttctcttttaacttgagtgacttcactagtactttgaacttattctcttttgactcgagttctttccatcgtt 39473508  T
Q  338 cttcaaattgcttctct-ttgattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaacccggcctttg 425  Q
    |||||||||||||| || ||||||  ||   |||||| | | ||| |||||||||||||||| |  | |||||||||||||| ||||||    
T  39473509 cttcaaattgcttcgctattgatttgaattcctcaaccttggttttaaattgcttctttttttatttaagctccttaacccgacctttg 39473597  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #13
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 90 - 192
Target Start/End: Complemental strand, 39223037 - 39222932
Alignment:
Q  90 tcatcatcattaagaggaaccgttgtattgaaactctttcaataaactagatgaataagaacatttacccgattgtgtttct---tcaatatattttttc 186  Q
    |||||||||||||||||||| ||||||  |||| | ||||||||||| |||||||||||||||||||||||||| | |||||   |||||||||||||||    
T  39223037 tcatcatcattaagaggaacagttgtaaagaaattttttcaataaacaagatgaataagaacatttacccgattctttttctccatcaatatattttttc 39222938  T
Q  187 cttgac 192  Q
    ||||||    
T  39222937 cttgac 39222932  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #14
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 415
Target Start/End: Original strand, 39397852 - 39398027
Alignment:
Q  241 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 340  Q
    ||||||||| | ||| ||| |||||||||||||||||  | |||||  |||| ||||||||||| |||||||||| ||||||||| |||||||||| |||    
T  39397852 tccttgactcgacctgcaacctgcttctcttttaactcaagctcctgcacctttactttgaactgattctcttttgactcaagttttttccaccgttctt 39397951  T
Q  341 caaattgcttctcttt-gattcaaagctctcaacttggctttcaaattgcttcttttttaaactgagctccttaac 415  Q
    ||| |||||| ||||| ||||  ||   |||||||||||||||||| ||||| |||| |||   ||||||||||||    
T  39397952 caatttgcttatcttttgatttgaaatcctcaacttggctttcaaagtgcttattttgtaattcgagctccttaac 39398027  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #15
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 217 - 356
Target Start/End: Original strand, 39414761 - 39414900
Alignment:
Q  217 aattttttcaactttaacttaggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctctttta 316  Q
    ||||||| || |||| ||| ||||||||| ||||||||| ||||||| ||||| |||||||||| ||| || ||| ||| ||||||||||||||| |||     
T  39414761 aatttttccagctttgactcaggatccttaacttgtccttcaaactgtttctcatttaacttgagctctttgaccagtagtttgaacttattctcatttg 39414860  T
Q  317 actcaagttctttccaccgtccttcaaattgcttctcttt 356  Q
     ||  ||||||||||| ||| |||||||||||||||||||    
T  39414861 tcttgagttctttccatcgttcttcaaattgcttctcttt 39414900  T

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Target: chr2; HSP #16
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 241 - 356
Target Start/End: Complemental strand, 39468379 - 39468264
Alignment:
Q  241 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 340  Q
    ||||||||||||||| ||| ||||||||||||||||||||||||||| |||| ||||||||||  |||||||||| |||  | |||||| |||||| | |    
T  39468379 tccttgacttgtccttcaatctgcttctcttttaacttgaactccttcacctttactttgaaccgattctcttttgacttcaattctttacaccgttcat 39468280  T
Q  341 caaattgcttctcttt 356  Q
    |||||||||| |||||    
T  39468279 caaattgcttatcttt 39468264  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #17
Raw Score: 59; E-Value: 8e-25
Query Start/End: Original strand, 22 - 159
Target Start/End: Complemental strand, 39370394 - 39370254
Alignment:
Q  22 aagacataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcat---taagaggaaccgttgtatt 118  Q
    |||||||| ||||||||||||||||| ||| |||||| | |||||| |||||||||||||||||| | ||||||||||   |||| |||||  || || |    
T  39370394 aagacatacaacattaacatgattaagaatgtttttatagaactatatagatcgggttataaaaaatatcatcatcatcattaagtggaacaattataat 39370295  T
Q  119 gaaactctttcaataaactagatgaataagaacatttaccc 159  Q
    |||| |   ||||||||||||||||||||||||||||||||    
T  39370294 gaaattaaatcaataaactagatgaataagaacatttaccc 39370254  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #18
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 39137895 - 39137807
Alignment:
Q  268 tcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttt 356  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||| |||| ||||||||||||||| |||||| ||||||||||||    
T  39137895 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccaccgttcttcaatttgcttctcttt 39137807  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #19
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 26 - 163
Target Start/End: Original strand, 39381275 - 39381412
Alignment:
Q  26 cataaaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaactc 125  Q
    |||| |||||||||| ||||||||||||||||||  || ||||||||||  ||||  |||| | ||| ||||||||| || |||   || | ||||| ||    
T  39381275 catacaacattaacacgattaaaaatatttttaatgaattatgtagatcaagttaataaaagtatcaacatcattaaaagaaacaactgaaatgaaattc 39381374  T
Q  126 tttcaataaactagatgaataagaacatttacccgatt 163  Q
    ||||| ||||||| ||||||||||||||||||| ||||    
T  39381375 tttcagtaaactatatgaataagaacatttaccagatt 39381412  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #20
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 237 - 352
Target Start/End: Original strand, 39381510 - 39381625
Alignment:
Q  237 aggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgt 336  Q
    |||||||||| |||||| | |||||||||||||||||||||||| ||| || | || ||||||||||| |||||||||| | ||  ||||||||   |||    
T  39381510 aggatccttgtcttgtctttcaaactgcttctcttttaacttgagctcattcatctttactttgaactcattctcttttgattcgtgttctttcattcgt 39381609  T
Q  337 ccttcaaattgcttct 352  Q
     ||||||||| |||||    
T  39381610 tcttcaaatttcttct 39381625  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #21
Raw Score: 44; E-Value: 7e-16
Query Start/End: Original strand, 238 - 353
Target Start/End: Original strand, 39421832 - 39421947
Alignment:
Q  238 ggatccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtc 337  Q
    |||||||||||| || |||||||  |||| |||||||| |||| ||| || ||  ||||||||||||||||||||||| |||  |||||||||||  ||     
T  39421832 ggatccttgactagtgctccaaatcgcttgtcttttaatttgagctctttcactagtactttgaacttattctcttttgacttgagttctttccattgtt 39421931  T
Q  338 cttcaaattgcttctc 353  Q
    ||||||||| ||||||    
T  39421932 cttcaaatttcttctc 39421947  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #22
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 304 - 425
Target Start/End: Complemental strand, 39152561 - 39152439
Alignment:
Q  304 ttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttt-gattcaaagctctcaacttggctttcaaattgcttcttttttaaac 402  Q
    |||||||||||| |||| || ||||||||||||  |||||||||||||||||| | ||  |||  |||||| ||| ||||||||| |||||||||| |      
T  39152561 ttattctcttttgactcgagctctttccaccgtttttcaaattgcttctcttttgttttgaagtcctcaacctggatttcaaatttcttcttttttgatt 39152462  T
Q  403 tgagctccttaacccggcctttg 425  Q
    | |||||||||||| | ||||||    
T  39152461 taagctccttaacctgacctttg 39152439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #23
Raw Score: 38; E-Value: 0.000000000003
Query Start/End: Original strand, 118 - 163
Target Start/End: Original strand, 39421688 - 39421733
Alignment:
Q  118 tgaaactctttcaataaactagatgaataagaacatttacccgatt 163  Q
    |||||||||||||||||| |||||||||||||||||||||| ||||    
T  39421688 tgaaactctttcaataaattagatgaataagaacatttaccagatt 39421733  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #24
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 257 - 355
Target Start/End: Original strand, 39494461 - 39494559
Alignment:
Q  257 caaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctctt 355  Q
    |||||||||||||||||  ||| | |||||| || ||| |||||||||| || |||||| ||||  | |||||||  |||||||||||||| |||||||    
T  39494461 caaactgcttctcttttggcttcagctccttcacgtgtgctttgaacttcttgtcttttgactctggctctttccctcgtccttcaaattgtttctctt 39494559  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #25
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 39468485 - 39468448
Alignment:
Q  126 tttcaataaactagatgaataagaacatttacccgatt 163  Q
    ||||||||||||||||||||||||||||||||| ||||    
T  39468485 tttcaataaactagatgaataagaacatttaccagatt 39468448  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #26
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 31 - 84
Target Start/End: Complemental strand, 39223154 - 39223101
Alignment:
Q  31 aacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataaa 84  Q
    |||||||||||||||||||||||| ||||| || || ||||||| |||| ||||    
T  39223154 aacattaacatgattaaaaatattcttaaagaattaagtagatcaggttgtaaa 39223101  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #27
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 126 - 170
Target Start/End: Complemental strand, 39459431 - 39459387
Alignment:
Q  126 tttcaataaactagatgaataagaacatttacccgattgtgtttc 170  Q
    ||||||||| ||| ||||||||||||| |||||||||| ||||||    
T  39459431 tttcaataagctaaatgaataagaacacttacccgattctgtttc 39459387  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 67; Significance: 1e-29; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 67; E-Value: 1e-29
Query Start/End: Original strand, 241 - 398
Target Start/End: Complemental strand, 16113339 - 16113181
Alignment:
Q  241 tccttgacttgtcctccaaactgcttctcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtcctt 340  Q
    |||||||||||| || ||| |||||||||||||||||||| ||||||  ||| ||||||||||| |||||||||| | || ||||||||||||||| |||    
T  16113339 tccttgacttgtacttcaatctgcttctcttttaacttgagctccttctcctttactttgaactgattctcttttgattcgagttctttccaccgttctt 16113240  T
Q  341 caaattgcttctc-tttgattcaaagctctcaacttggctttcaaattgcttctttttt 398  Q
    |||||||||| || |||||||  ||   ||||||||||||||| || ||||| ||||||    
T  16113239 caaattgcttatcgtttgatttgaaatactcaacttggctttccaaatgcttatttttt 16113181  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.0000002
Query Start/End: Original strand, 126 - 163
Target Start/End: Complemental strand, 16113478 - 16113441
Alignment:
Q  126 tttcaataaactagatgaataagaacatttacccgatt 163  Q
    |||||||||||||||||||| |||||| ||||||||||    
T  16113478 tttcaataaactagatgaatgagaacacttacccgatt 16113441  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 49; Significance: 7e-19; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 268 - 356
Target Start/End: Complemental strand, 19807845 - 19807757
Alignment:
Q  268 tcttttaacttgaactcctttacctgtactttgaacttattctcttttaactcaagttctttccaccgtccttcaaattgcttctcttt 356  Q
    ||||||||||||| ||| || ||| ||||||||||||||||||||||| |||| ||||||||||||| | |||||| ||| ||||||||    
T  19807845 tcttttaacttgagctctttgaccagtactttgaacttattctcttttgactcgagttctttccacctttcttcaatttgattctcttt 19807757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 66 - 162
Target Start/End: Complemental strand, 19808059 - 19807963
Alignment:
Q  66 atgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaactctttcaataaactagatgaataagaacatttacccgat 162  Q
    ||||||||| |||||| |||| | ||| |||||| || || ||| | || | |||||||| ||| ||||||||||||||||||||| ||||||||||    
T  19808059 atgtagatcaggttattaaaaatatcaacatcataaaaagaaacagctgaaatgaaactccttctataaactagatgaataagaacttttacccgat 19807963  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 42; Significance: 0.00000000000001; HSPs: 2)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 22 - 163
Target Start/End: Complemental strand, 33561281 - 33561135
Alignment:
Q  22 aagacata-aaacattaacatgattaaaaatatttttaaacaactatgtagatcgggttataa----aaattgtcatcatcattaagaggaaccgttgta 116  Q
    |||||||| |||||||||||||||||||||| | ||||||  | || ||||||| || |||||    ||||  ||||||||| | ||||||||  || ||    
T  33561281 aagacatacaaacattaacatgattaaaaatgtgtttaaaggattaagtagatcaggatataacaaaaaatcatcatcatcactgagaggaacacttata 33561182  T
Q  117 ttgaaactctttcaataaactagatgaataagaacatttacccgatt 163  Q
     | ||| ||||||||||||||||||||| ||||||||||||| ||||    
T  33561181 ataaaattctttcaataaactagatgaagaagaacatttaccggatt 33561135  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 118 - 158
Target Start/End: Complemental strand, 17059642 - 17059602
Alignment:
Q  118 tgaaactctttcaataaactagatgaataagaacatttacc 158  Q
    ||||| ||||| |||||||||||||||||| ||||||||||    
T  17059642 tgaaattcttttaataaactagatgaataacaacatttacc 17059602  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8 (Bit Score: 29; Significance: 0.0000006; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 32 - 147
Target Start/End: Complemental strand, 45342305 - 45342187
Alignment:
Q  32 acattaacatgattaaaaatat---ttttaaacaactatgtagatcgggttataaaaattgtcatcatcattaagaggaaccgttgtattgaaactcttt 128  Q
    |||||||||| |||||| ||||   |||||||  | |||||||||| |||||| |||| | ||| |||||  || || ||  |||| | ||||| |||||    
T  45342305 acattaacatcattaaacatatattttttaaaagaatatgtagatcaggttattaaaaatatcaacatcaacaaaagaaatagttgaaatgaaattcttt 45342206  T
Q  129 caataaactagatgaataa 147  Q
    |||||||||||||||||||    
T  45342205 caataaactagatgaataa 45342187  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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