View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19266_low_24 (Length: 434)
Name: NF19266_low_24
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_24 |
 | |
|
Alignment Details
Target: chr8 (Bit Score: 386; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 386; E-Value: 0
Query Start/End: Original strand, 13 - 418
Target Start/End: Complemental strand, 38439509 - 38439104
Alignment:
| Q |
13 |
atcatcatgcaaaatgtacatagcaggaactcggttggaaacatggttgagcttattctaattgcatacatagtggcaagtcagagtaacaaaaaagaca |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
|
|
| T |
38439509 |
atcatcatgcaaaatgtacatagcaggaactcggttcgaaacatggttgagcttattctaattacatacatagtggcaagtcagagtaacaaaaaagaca |
38439410 |
T |
|
| Q |
113 |
aagatgttaattagtgagtgaaaacattgtattgttcatattgaatgatcaacgatacccaagctaaaatcgagtggtcacatgtgtttagtttgatagt |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38439409 |
aagatgttaattagtgagtgaaaacattgtattgttcatattgaatgatcaacgatacccaagctaaaatcgagtggtcacatgtgtttagtttgatagt |
38439310 |
T |
|
| Q |
213 |
gtctaaatatagcattataatagcactggttcataagctacccttgtaactaacattctaattgtagttactgtaacttgcatctaaaattagttattct |
312 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| |
|
|
| T |
38439309 |
gtctaaatatagcattataatagcactggttcataagctacccttgtaactaacattctaattgtagttactgtaacatgcatctaaaattagttattct |
38439210 |
T |
|
| Q |
313 |
aaattccaaatatatttatacttaaatttacctagacaagacaatagatacaataatcagactgagtctctaaagattacaataactagtgtgctttaca |
412 |
Q |
| |
|
||| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
38439209 |
aaaatccaaatatatttatacttaaatttacctagagaagacaatagatacaataatcagactgagtctctaaagattacaataactagtgtgctttaca |
38439110 |
T |
|
| Q |
413 |
tgtttg |
418 |
Q |
| |
|
|||||| |
|
|
| T |
38439109 |
tgtttg |
38439104 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University