View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_27 (Length: 431)
Name: NF19266_low_27
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_27 |
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Alignment Details
Target: chr8 (Bit Score: 361; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 361; E-Value: 0
Query Start/End: Original strand, 18 - 415
Target Start/End: Original strand, 41653486 - 41653893
Alignment:
| Q |
18 |
aagttattgtccaaagtgattggatcatcaaaaacaaccaaatcaccaaaatggttttggtttgccaatatggttcggttaccccatgctggtgtgccta |
117 |
Q |
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| T |
41653486 |
aagttattgtccaaagtgattggatcatcaaaaacaaccaaatcaccaaaatggttttggtttgccaatatggttcggttaccccatgctggtgtgccta |
41653585 |
T |
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| Q |
118 |
caattgctgatgtagcatttttggagttgtgaccgttgtaaataatgtcatgaaaataaaacactaatctcttgcatggttcatgaacacgagccctttt |
217 |
Q |
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| T |
41653586 |
caattgctgatgtagcatttttggagttgtgaccgttgtaaataatgtcatgaaaataaaacactaatctcttgcatggttcatgaacacgatccctttt |
41653685 |
T |
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| Q |
218 |
tcttgatctggttggagtggcagatgaatatgtcaatgagattaggagtaagaagaagaggagtgttgaaatgagcttcatttcctcc----------tt |
307 |
Q |
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| T |
41653686 |
tcttgatctggttggagtggcagatgaatatgtcaatgagattaggagtaagaagaagaggagagttgaaatgagcttcatttcctccttcaattctttt |
41653785 |
T |
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| Q |
308 |
caatattgttaattggttttatctaatagtgtggaggctatgacttatgagttcatgaagttgatatttataagcggttgtgcaccaaaagcataaacta |
407 |
Q |
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| T |
41653786 |
caatattgttaattggttttatctaatagtttggaggctatgacttatgagttcatgaagttgatatttataagcggttgtgcaccaaaagcataaacta |
41653885 |
T |
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| Q |
408 |
tgttgcaa |
415 |
Q |
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| T |
41653886 |
tgttgcaa |
41653893 |
T |
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