View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_29 (Length: 419)

Name: NF19266_low_29
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_29
NF19266_low_29
[»] chr8 (7 HSPs)
chr8 (10-401)||(38821613-38822026)
chr8 (229-401)||(38799491-38799663)
chr8 (238-358)||(38807035-38807155)
chr8 (236-398)||(43479641-43479803)
chr8 (267-320)||(41944021-41944074)
chr8 (268-314)||(26592251-26592297)
chr8 (268-320)||(25865777-25865829)
[»] scaffold0197 (1 HSPs)
scaffold0197 (259-401)||(31007-31149)
[»] chr4 (3 HSPs)
chr4 (241-398)||(24860545-24860702)
chr4 (271-371)||(34748781-34748881)
chr4 (277-371)||(40036062-40036156)
[»] chr5 (5 HSPs)
chr5 (240-400)||(12531489-12531649)
chr5 (240-400)||(12546970-12547130)
chr5 (240-383)||(9866628-9866771)
chr5 (280-375)||(9870003-9870098)
chr5 (283-320)||(12538675-12538712)
[»] chr7 (3 HSPs)
chr7 (240-383)||(3929932-3930075)
chr7 (259-401)||(21317570-21317712)
chr7 (256-400)||(3928596-3928740)
[»] chr2 (3 HSPs)
chr2 (240-395)||(13576350-13576505)
chr2 (268-374)||(34562651-34562757)
chr2 (268-374)||(34571445-34571551)
[»] chr1 (1 HSPs)
chr1 (268-374)||(7594130-7594236)


Alignment Details
Target: chr8 (Bit Score: 289; Significance: 1e-162; HSPs: 7)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 289; E-Value: 1e-162
Query Start/End: Original strand, 10 - 401
Target Start/End: Original strand, 38821613 - 38822026
Alignment:
Q  10 attattctataatttatttttgacagagtatgtactctatgtaacaggataacaaatagta---tatgggaaataaagaaataacaaattcaaagatcta 106  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||   ||||||||||||||||||||||||||||||| ||||    
T  38821613 attattctataatttatttttgacagagtatgtactctatgtaacagaataacaaatagtagtatatgggaaataaagaaataacaaattcaaaggtcta 38821712  T
Q  107 tcttcaaaatgtaaacaaagtgttaaattgcaacatta-------gtattcagattaaaatattgctacaattagaactgaagattcacacatagagcca 199  Q
    |||||||||||||||||||| |||||||||||||||||       ||||||||||||||||| ||||||||||||||||||||||||||||||||||| |    
T  38821713 tcttcaaaatgtaaacaaagagttaaattgcaacattactgattagtattcagattaaaatagtgctacaattagaactgaagattcacacatagagcaa 38821812  T
Q  200 atactactaactatccaatttagggtaacgataataaga------------actaagccctctctcctctgattcttcttgcaagctgaatgtccttagg 287  Q
    ||||||||||||||||||||||||||||||| | | | |            |||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821813 atactactaactatccaatttagggtaacgaaattgaaattctagcaaatgactaagccctctctcctctgattcttcttgcaagctgaatgtccttagg 38821912  T
Q  288 catgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcg 387  Q
    |||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  38821913 catgattgtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcg 38822012  T
Q  388 ctgctttggaatct 401  Q
    ||||| ||||||||    
T  38822013 ctgctctggaatct 38822026  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 165; E-Value: 4e-88
Query Start/End: Original strand, 229 - 401
Target Start/End: Complemental strand, 38799663 - 38799491
Alignment:
Q  229 gataataagaactaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttg 328  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||    
T  38799663 gataataagaactaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgattgtaactctcttagcatgaattgcacaaaggtttg 38799564  T
Q  329 tgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctttggaatct 401  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||    
T  38799563 tgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctctggaatct 38799491  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 89; E-Value: 9e-43
Query Start/End: Original strand, 238 - 358
Target Start/End: Complemental strand, 38807155 - 38807035
Alignment:
Q  238 aactaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaa 337  Q
    |||||||||||||| |||||||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| ||  | |||||||| ||||    
T  38807155 aactaagccctctcgcctctgattcttcttgcaagttgaatgtccttaggcatgatagtaactctcttagcatgaattgcgcacggatttgtgtcctcaa 38807056  T
Q  338 agagaccaaccaagtaagctt 358  Q
    |||||||||||||||||||||    
T  38807055 agagaccaaccaagtaagctt 38807035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 79; E-Value: 8e-37
Query Start/End: Original strand, 236 - 398
Target Start/End: Original strand, 43479641 - 43479803
Alignment:
Q  236 agaactaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttc 335  Q
    |||||||||||||||| ||||| |||||||||||||| ||||| ||||||||||| || ||||| |||||||||||||| || |||||||| || |||||    
T  43479641 agaactaagccctctcgcctctaattcttcttgcaagttgaatatccttaggcataattgtaaccctcttagcatgaatagcgcaaaggttagtatcttc 43479740  T
Q  336 aaagagaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctttggaa 398  Q
    ||| | |||||| |  ||||||||||| |||||||||||||| ||||| ||||| || |||||    
T  43479741 aaacaaaccaacaagataagcttcagcggcttcttgaagagcagaaacagcgctactctggaa 43479803  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 267 - 320
Target Start/End: Complemental strand, 41944074 - 41944021
Alignment:
Q  267 tgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcaca 320  Q
    |||||| ||||||||||| ||||| || ||||| ||||||||||||||||||||    
T  41944074 tgcaagttgaatgtcctttggcataattgtaaccctcttagcatgaattgcaca 41944021  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 268 - 314
Target Start/End: Complemental strand, 26592297 - 26592251
Alignment:
Q  268 gcaagctgaatgtccttaggcatgatggtaactctcttagcatgaat 314  Q
    ||||||||||| |||||||||||||| ||||| | ||||||||||||    
T  26592297 gcaagctgaatatccttaggcatgatagtaacacgcttagcatgaat 26592251  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #7
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 268 - 320
Target Start/End: Complemental strand, 25865829 - 25865777
Alignment:
Q  268 gcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcaca 320  Q
    ||||||||||| ||||| ||||| || || || ||||||||||||||||||||    
T  25865829 gcaagctgaatatcctttggcataatcgttaccctcttagcatgaattgcaca 25865777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0197 (Bit Score: 75; Significance: 2e-34; HSPs: 1)
Name: scaffold0197
Description:

Target: scaffold0197; HSP #1
Raw Score: 75; E-Value: 2e-34
Query Start/End: Original strand, 259 - 401
Target Start/End: Complemental strand, 31149 - 31007
Alignment:
Q  259 attcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagctt 358  Q
    |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| || ||||| ||||| |||||||| | |||||| |  |||||||    
T  31149 attcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagctt 31050  T
Q  359 cagcagcttcttgaagagcggaaactgcgctgctttggaatct 401  Q
    ||||||||||||||||||| ||||| || ||||| ||||||||    
T  31049 cagcagcttcttgaagagcagaaacagcactgctctggaatct 31007  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 74; Significance: 8e-34; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 74; E-Value: 8e-34
Query Start/End: Original strand, 241 - 398
Target Start/End: Complemental strand, 24860702 - 24860545
Alignment:
Q  241 taagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaaga 340  Q
    ||||||||||| ||||||||||| |  || || ||||| ||||| ||||| ||||||||||||||||||||||| || ||||| ||||| ||||||||||    
T  24860702 taagccctctcgcctctgattctgcgagcgagttgaatatccttgggcataatggtaactctcttagcatgaatagcgcaaagatttgtatcttcaaaga 24860603  T
Q  341 gaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctttggaa 398  Q
    | ||||| |  |||||||||||||||||||||||||| ||||| ||||| || |||||    
T  24860602 gtccaacgagataagcttcagcagcttcttgaagagcagaaacagcgctactctggaa 24860545  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 271 - 371
Target Start/End: Complemental strand, 34748881 - 34748781
Alignment:
Q  271 agctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttctt 370  Q
    ||||| || |||||||||||||| || || | ||| |||||||| ||||| ||||| || || |||||||||||||| |  ||||| ||||| |||||||    
T  34748881 agctggatatccttaggcatgatagtgacacgcttggcatgaatggcacagaggttagtatcctcaaagagaccaacgagataagcctcagccgcttctt 34748782  T
Q  371 g 371  Q
    |    
T  34748781 g 34748781  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 277 - 371
Target Start/End: Complemental strand, 40036156 - 40036062
Alignment:
Q  277 atgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttg 371  Q
    |||||||| ||||| || ||||||| ||| ||||| || ||||| | ||| ||||| |||||||||||||| |  || ||||||||||| |||||    
T  40036156 atgtccttgggcataatagtaactcgcttggcatggatagcacacaagttagtgtcctcaaagagaccaacaagatatgcttcagcagcctcttg 40036062  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 73; Significance: 3e-33; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 240 - 400
Target Start/End: Complemental strand, 12531649 - 12531489
Alignment:
Q  240 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 339  Q
    |||||||||||| ||||||||||| |  || || ||||| |||||||||||||| ||||| |||||||||||||| ||||| || || || ||||||||     
T  12531649 ctaagccctctcgcctctgattctgcgagcgagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaac 12531550  T
Q  340 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctttggaatc 400  Q
    | |||||| |  |||||||||||||||||||||||||| ||||| || |||||||||||||    
T  12531549 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 12531489  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 69; E-Value: 8e-31
Query Start/End: Original strand, 240 - 400
Target Start/End: Original strand, 12546970 - 12547130
Alignment:
Q  240 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 339  Q
    |||||| ||||| ||||| ||||| |  ||||| ||||| |||||||||||||| ||||| |||||||||||||| ||||| || || || ||||||||     
T  12546970 ctaagctctctcgcctctaattctgcgagcaagttgaatatccttaggcatgatagtaaccctcttagcatgaatggcacagagattagtatcttcaaac 12547069  T
Q  340 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctttggaatc 400  Q
    | |||||| |  |||||||||||||||||||||||||| ||||| || |||||||||||||    
T  12547070 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttggaatc 12547130  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 9866628 - 9866771
Alignment:
Q  240 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 339  Q
    |||||||||||  ||||||||||||   || || || ||||||| |||||| || |||||||||||||||||||| ||||||||||| || ||||||||     
T  9866628 ctaagccctctggcctctgattctttaagcgagttggatgtcctcaggcataatagtaactctcttagcatgaatagcacaaaggttagtatcttcaaac 9866727  T
Q  340 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaac 383  Q
    | |||||| |  ||  ||| |||||||||||||||||| |||||    
T  9866728 aaaccaacaagatagtctttagcagcttcttgaagagcagaaac 9866771  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 280 - 375
Target Start/End: Complemental strand, 9870098 - 9870003
Alignment:
Q  280 tccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagcttcttgaaga 375  Q
    ||||||||||| || |||||||||||||||||||| || ||||| ||  | |||| ||| | |||||| || ||||||||| ||||||||||||||    
T  9870098 tccttaggcataatagtaactctcttagcatgaatagcgcaaagattaatatcttaaaacaaaccaacaaaataagcttcaacagcttcttgaaga 9870003  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 283 - 320
Target Start/End: Complemental strand, 12538712 - 12538675
Alignment:
Q  283 ttaggcatgatggtaactctcttagcatgaattgcaca 320  Q
    ||||||||||| |||||||||||||||||||| |||||    
T  12538712 ttaggcatgatagtaactctcttagcatgaatagcaca 12538675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 240 - 383
Target Start/End: Original strand, 3929932 - 3930075
Alignment:
Q  240 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 339  Q
    ||||||||| || |||||||||||||||||||| ||||| ||||| ||||| || |||||||||||||||||||| |||||||| || || ||||||||     
T  3929932 ctaagccctttcgcctctgattcttcttgcaagttgaatatccttcggcataatagtaactctcttagcatgaatggcacaaagattcgtatcttcaaac 3930031  T
Q  340 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaac 383  Q
    | |||||| |  || ||||||||||||||||||||||| |||||    
T  3930032 aaaccaacaagatacgcttcagcagcttcttgaagagcagaaac 3930075  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 259 - 401
Target Start/End: Complemental strand, 21317712 - 21317570
Alignment:
Q  259 attcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagctt 358  Q
    |||||||||||||| ||||| ||||||||||| || |||||||||||||||||||| || ||||| ||||| |||||||| | |||||| |  |||||||    
T  21317712 attcttcttgcaagttgaatatccttaggcataatagtaactctcttagcatgaatagcgcaaagatttgtatcttcaaacaaaccaacaagataagctt 21317613  T
Q  359 cagcagcttcttgaagagcggaaactgcgctgctttggaatct 401  Q
    |||| |||||||||||||| ||||| || ||||| ||||||||    
T  21317612 cagccgcttcttgaagagcagaaacagcactgctctggaatct 21317570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 37; E-Value: 0.00000000001
Query Start/End: Original strand, 256 - 400
Target Start/End: Original strand, 3928596 - 3928740
Alignment:
Q  256 ctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaag 355  Q
    |||||||| | |||||| | ||| ||||||||||  || |||||||||||||||||||| |||||||| ||  | |||||||| | |||||| |   | |    
T  3928596 ctgattctgcatgcaagtttaatatccttaggcacaatagtaactctcttagcatgaatagcacaaagattcatatcttcaaacaaaccaacaatacacg 3928695  T
Q  356 cttcagcagcttcttgaagagcggaaactgcgctgctttggaatc 400  Q
    |||||||   |||||||||||| ||||| |||||| | |||||||    
T  3928696 cttcagcgatttcttgaagagcagaaacagcgctgatctggaatc 3928740  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 72; Significance: 1e-32; HSPs: 3)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 240 - 395
Target Start/End: Complemental strand, 13576505 - 13576350
Alignment:
Q  240 ctaagccctctctcctctgattcttcttgcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaag 339  Q
    ||||||||| || |||||||||||||| ||||| ||||| ||||||||||| || ||||| |||||||||||||| |||||||| || || || |||||     
T  13576505 ctaagccctttcgcctctgattcttctcgcaagttgaatatccttaggcataatagtaaccctcttagcatgaatagcacaaagattcgtatcctcaaac 13576406  T
Q  340 agaccaaccaagtaagcttcagcagcttcttgaagagcggaaactgcgctgctttg 395  Q
    | |||||| |  |||||||||||||||||||||||||| ||||| || ||||||||    
T  13576405 aaaccaacaagataagcttcagcagcttcttgaagagcagaaacagcactgctttg 13576350  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 34562651 - 34562757
Alignment:
Q  268 gcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 367  Q
    ||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |  || || || ||||| | ||||||||| || ||||| || ||||    
T  34562651 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 34562750  T
Q  368 cttgaag 374  Q
    | |||||    
T  34562751 cctgaag 34562757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 34571445 - 34571551
Alignment:
Q  268 gcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 367  Q
    ||||| ||||| ||||||||||| |||||||| |||||||||||||||||||| |  || || || ||||| | ||||||||| || ||||| || ||||    
T  34571445 gcaagttgaatatccttaggcataatggtaaccctcttagcatgaattgcacacaaattggtatcctcaaacaaaccaaccaaatatgcttccgctgctt 34571544  T
Q  368 cttgaag 374  Q
    | |||||    
T  34571545 cctgaag 34571551  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 39; Significance: 0.0000000000006; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 39; E-Value: 0.0000000000006
Query Start/End: Original strand, 268 - 374
Target Start/End: Original strand, 7594130 - 7594236
Alignment:
Q  268 gcaagctgaatgtccttaggcatgatggtaactctcttagcatgaattgcacaaaggtttgtgtcttcaaagagaccaaccaagtaagcttcagcagctt 367  Q
    ||||||||||| ||||| ||||| || || || |||||||||||||||||||| || || ||||| ||||| |  ||||||| |||||| ||||| ||||    
T  7594130 gcaagctgaatatcctttggcataattgtcaccctcttagcatgaattgcacacagattggtgtcctcaaacaatccaaccaggtaagcctcagctgctt 7594229  T
Q  368 cttgaag 374  Q
    | |||||    
T  7594230 cctgaag 7594236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University