View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_32 (Length: 404)
Name: NF19266_low_32
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_32 |
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Alignment Details
Target: chr4 (Bit Score: 249; Significance: 1e-138; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 17 - 385
Target Start/End: Original strand, 20063911 - 20064283
Alignment:
| Q |
17 |
tggttgaaaaaattgtggacacttcgtaccaatcttatcattatttaaaaatattacacaacattttagaagataaaatgtgaaaagattacaaataaga |
116 |
Q |
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| T |
20063911 |
tggttgaaaaaattgtggacacttcgtaccaataatatcattatttaaaaatattacacaacattttagaagataaaatgtgaaaagattacaaataaga |
20064010 |
T |
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| Q |
117 |
tatatcctaacttactnnnnnnnn-tagcatacttatacttggaagaaatataacaagaaaaagggcattagaaaaaagaaacaa-gcannnnnnnn--a |
212 |
Q |
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|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| | |
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| T |
20064011 |
tatatcctaacttactaaaaaaaaatagcatacttatacttggaagaaatataacaagaaaaagggcattagaaaaaagaaacaaagcatttttttttta |
20064110 |
T |
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| Q |
213 |
tagctaggagctatcttcatcaactttcatgaccttaaggaattccatctcctccttaaacttagccattgaagcttttggaagtgacacaaagatccta |
312 |
Q |
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||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
20064111 |
tagctaggaactatcttcatcaactttcatgaccttaaggaattccatctcctccttaaacttagccattgaagcttttggaagtgacacaaagatccta |
20064210 |
T |
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| Q |
313 |
actcctcctttcattgaagaatccaacttacttggaggcnnnnnnngacacaaatccacaaaaccaaacatgt |
385 |
Q |
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||||||||||||||||||| |||||| ||| |||||||| | ||||||||||||||||||||||||| |
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| T |
20064211 |
actcctcctttcattgaaggatccaaattatttggaggcaaaaaaaggcacaaatccacaaaaccaaacatgt |
20064283 |
T |
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