View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_33 (Length: 403)
Name: NF19266_low_33
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_33 |
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| [»] chr8 (1 HSPs) |
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Alignment Details
Target: chr8 (Bit Score: 373; Significance: 0; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 373; E-Value: 0
Query Start/End: Original strand, 23 - 403
Target Start/End: Original strand, 8807288 - 8807668
Alignment:
| Q |
23 |
ggaaggttaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactgatacaccaaagtagtttcttc |
122 |
Q |
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| T |
8807288 |
ggaagattaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactgatacaccaaagtagtttcttc |
8807387 |
T |
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| Q |
123 |
catcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggttcctggaaagtctactaacaaaccatctgaaaagaattccaa |
222 |
Q |
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| T |
8807388 |
catcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggttcctggaaagtctactaacaaaccatctgaaaagaattccaa |
8807487 |
T |
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| Q |
223 |
aatgggatagttttgtgaacctattttgatcaaaagggtggatgaatttgagcaagagaggtggaaagaacttgacaatgaagcacatgaagtgttgttg |
322 |
Q |
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| T |
8807488 |
aatgggatagttttgtgaacctattttgatcaaaagggtggatgaatttgagcaagagaggtggaaagaacttgacaatgaagcacatgaagtgttgttg |
8807587 |
T |
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| Q |
323 |
atgtagaatggaaatggaacatggagttttccacatgtttcattgcatgaattttttggaagcataggtggttcaactagt |
403 |
Q |
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| T |
8807588 |
atgtagaatggaaatggaacatggagttttccacatgtttcattgcatgaattttttggaagcaaaggtggttcaactagt |
8807668 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 97; Significance: 1e-47; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 23 - 271
Target Start/End: Original strand, 22923687 - 22923937
Alignment:
| Q |
23 |
ggaaggttaactgtttcacaatctgctttacaaagtgaagaatcttcacaatcatacagaccaacaacattatcaactgatacaccaaa--gtagtttct |
120 |
Q |
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||||||||||||||||| |||| ||||||||||||||||||| ||||||||||| | ||| |||||| |||||||||| | |||||||| | ||| | |
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| T |
22923687 |
ggaaggttaactgtttcgcaatttgctttacaaagtgaagaaccttcacaatcacagagagcaacaaaattatcaactaagacaccaaattgattttttt |
22923786 |
T |
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| Q |
121 |
tccatcaaaactcctctcaccaaatgaattcaaatcgttgtactgtcgacacgatgaggt-tcctggaaagtctactaacaaaccatctgaaaagaattc |
219 |
Q |
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| |||||||||||||||| ||||| |||||||||||||||| ||||||| || || || |||| ||||||||||||||||| |||| | ||||||| |
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| T |
22923787 |
ttcatcaaaactcctctcttcaaataaattcaaatcgttgtatcgtcgacatgacgatgtatcct-aaaagtctactaacaaacaatctaagaagaattt |
22923885 |
T |
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| Q |
220 |
caaaatgggatagttttgtgaacctattttgatcaaaagggtggatgaattt |
271 |
Q |
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| T |
22923886 |
caagataagatagttttgtgaacctattttgttcaaaagggtagatgaattt |
22923937 |
T |
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