View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_34 (Length: 378)
Name: NF19266_low_34
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_34 |
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| [»] chr1 (10 HSPs) |
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| [»] chr3 (5 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 148; Significance: 5e-78; HSPs: 10)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 148; E-Value: 5e-78
Query Start/End: Original strand, 219 - 378
Target Start/End: Original strand, 23650161 - 23650320
Alignment:
| Q |
219 |
caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatct |
318 |
Q |
| |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
23650161 |
caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcactgcatcctccaaaataaaaagaaaatct |
23650260 |
T |
|
| Q |
319 |
gcaagttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgtatc |
378 |
Q |
| |
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||||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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| T |
23650261 |
gcaagttattatctactcggcaaggaaatggaattaacagagataaagtgctaatgtatc |
23650320 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 220 - 378
Target Start/End: Original strand, 23618817 - 23618975
Alignment:
| Q |
220 |
aaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatctg |
319 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23618817 |
aaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcactgcatcctccaaaataaaaagaaaatctg |
23618916 |
T |
|
| Q |
320 |
caagttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgtatc |
378 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||| ||||||||||||||| |
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|
| T |
23618917 |
caagttattatctactcggcaaggaaatggaattaacagagataaagtgctaatgtatc |
23618975 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 147; E-Value: 2e-77
Query Start/End: Original strand, 220 - 378
Target Start/End: Original strand, 23735787 - 23735945
Alignment:
| Q |
220 |
aaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatctg |
319 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
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| T |
23735787 |
aaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacatgaactatgaggaaagctcgctgcatcctccaaaataaaaagaaaatctg |
23735886 |
T |
|
| Q |
320 |
caagttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgtatc |
378 |
Q |
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|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23735887 |
caagttattatctactcggcaaggaaatggaattaacagagatgaagtgctaatgtatc |
23735945 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 129; E-Value: 1e-66
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23735564 - 23735721
Alignment:
| Q |
1 |
aacaaagtaagacaatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacga |
96 |
Q |
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||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||| |||| |
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| T |
23735564 |
aacaaagtaagacaatctagaataaaaacatccatacaattggttgatattaaaaagtgatgattcgagttacctatttgcatttgagatttgataacga |
23735663 |
T |
|
| Q |
97 |
ttggggagacactcggttcctggcaccattcctccaatttccaacagcacaactagta |
154 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
23735664 |
ttggggagacactcggttcctggcaccattcctccaatttccaacagcacaactagta |
23735721 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 117; E-Value: 2e-59
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23649939 - 23650096
Alignment:
| Q |
1 |
aacaaagtaagacaatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacga |
96 |
Q |
| |
|
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||| ||||| ||||||||||||||| |
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| T |
23649939 |
aacaaagtaagacaatctagaataaaaacatccatacaattggttgatattaaaaagtaatgattcgagttacctatttgcattcgagatttgatgacga |
23650038 |
T |
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| Q |
97 |
ttggggagacactcggttcctggcaccattcctccaatttccaacagcacaactagta |
154 |
Q |
| |
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||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
23650039 |
ttgaggagacactcggttcctggcacctttcctccaatttccaacagcacaactagta |
23650096 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 114; E-Value: 1e-57
Query Start/End: Original strand, 1 - 154
Target Start/End: Original strand, 23618593 - 23618751
Alignment:
| Q |
1 |
aacaaagtaagacaatctagaataaaaa-cattcatacaattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacg |
95 |
Q |
| |
|
|||||||||||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| | |
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| T |
23618593 |
aacaaagtaagacaatctagaataaaaaacatccatacaattggttgatattaaaaagtgatgattcgagttacctatttgcatttgagatttgatgaag |
23618692 |
T |
|
| Q |
96 |
attggggagacactcggttcctggcaccattcctccaatttccaacagcacaactagta |
154 |
Q |
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|||||||||||||||||||||||||| | |||||||||||||||||||||||||||||| |
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| T |
23618693 |
attggggagacactcggttcctggcatcgttcctccaatttccaacagcacaactagta |
23618751 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 23626871 - 23626751
Alignment:
| Q |
38 |
aattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacgattggggagacactcggttcctggcaccattcctccaa |
133 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || |||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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| T |
23626871 |
aattggttgatattaaaatgagattatttgatttacctatttgcatttgagatttgatgatgattggggagacactcggttgctggcaccgttcctccaa |
23626772 |
T |
|
| Q |
134 |
tttccaacagcacaactagta |
154 |
Q |
| |
|
||||||||||||||||||||| |
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| T |
23626771 |
tttccaacagcacaactagta |
23626751 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 38 - 154
Target Start/End: Complemental strand, 23708597 - 23708477
Alignment:
| Q |
38 |
aattggttgatattaaaaagagatgattcgagttacct----gcatttgagatttgatgacgattggggagacactcggttcctggcaccattcctccaa |
133 |
Q |
| |
|
|||||||||||||||||| ||||| ||| || |||||| |||||||||||||||||| |||||||||||||||||||| |||||||| ||||||||| |
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|
| T |
23708597 |
aattggttgatattaaaatgagattatttgatttacctatttgcatttgagatttgatgatgattggggagacactcggttgctggcaccgttcctccaa |
23708498 |
T |
|
| Q |
134 |
tttccaacagcacaactagta |
154 |
Q |
| |
|
||||||||||||||||||||| |
|
|
| T |
23708497 |
tttccaacagcacaactagta |
23708477 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 23626676 - 23626578
Alignment:
| Q |
219 |
caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaataca---tgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
23626676 |
caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacacagtcaactatgaggaaagctcactacatcctccaaaataaaaagaaa |
23626578 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 73; E-Value: 3e-33
Query Start/End: Original strand, 219 - 314
Target Start/End: Complemental strand, 23708402 - 23708304
Alignment:
| Q |
219 |
caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaataca---tgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaa |
314 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| | |||||||||||||||||||||| |
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|
| T |
23708402 |
caaccggttgtttaatgatgttagagaatcaactaaaatctctcaaatacacagtcaactatgaggaaagctcactacatcctccaaaataaaaagaaa |
23708304 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 77; Significance: 1e-35; HSPs: 5)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 77; E-Value: 1e-35
Query Start/End: Original strand, 224 - 378
Target Start/End: Original strand, 52806782 - 52806942
Alignment:
| Q |
224 |
ggttgtttaatgatgttagagaatcaactaaaatctctcaaataca---tgaactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatctgc |
320 |
Q |
| |
|
||||| ||| ||||||||||||||||||||| |||||||||||||| | || | ||||| |||||| ||||||||||||||||||||||||| |||| |
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|
| T |
52806782 |
ggttgcttattgatgttagagaatcaactaatatctctcaaatacacagttaattcagaggacagctcattgcatcctccaaaataaaaagaaaacctgc |
52806881 |
T |
|
| Q |
321 |
---aagttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgtatc |
378 |
Q |
| |
|
|||||||||||| || ||||||||||| ||||||||||||||||||| |||||||||| |
|
|
| T |
52806882 |
tgcaagttattatctgcttggcaaggaaatggaattaacagagatgaagtactaatgtatc |
52806942 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 225 - 375
Target Start/End: Complemental strand, 54141351 - 54141198
Alignment:
| Q |
225 |
gttgtttaatgatgttagagaatcaactaaaatctctcaaatacatg---aactatgaggaaagctcaatgcatcctccaaaataaaaagaaaatctgca |
321 |
Q |
| |
|
|||| ||| ||||||| |||||||||||||||||||||||||||| | |||| |||||||| ||| ||||||||||||| |||||||||||||||| |
|
|
| T |
54141351 |
gttgcttattgatgttggagaatcaactaaaatctctcaaatacacggtcaactcagaggaaagatcattgcatcctccaaacgaaaaagaaaatctgca |
54141252 |
T |
|
| Q |
322 |
agttattatctactcggcaaggaaatagaattaacagagatgaagtgctaatgt |
375 |
Q |
| |
|
|| |||||||| |||||||| ||||| ||||||||| ||||||||| ||||||| |
|
|
| T |
54141251 |
aggtattatctgctcggcaaagaaatggaattaacaaagatgaagtactaatgt |
54141198 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 53; E-Value: 2e-21
Query Start/End: Original strand, 14 - 119
Target Start/End: Complemental strand, 53287104 - 53286991
Alignment:
| Q |
14 |
aatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacc--------tgcatttgagatttgatgacgattggggaga |
105 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |
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|
| T |
53287104 |
aatctagaataaaaacgtacatacaattggttgaaattaaaaagagatgatttgagttacctgtttgtttgcatttgtactttgatgacgattggggaga |
53287005 |
T |
|
| Q |
106 |
cactcggttcctgg |
119 |
Q |
| |
|
||||||||| |||| |
|
|
| T |
53287004 |
cactcggttgctgg |
53286991 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #4
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 12 - 75
Target Start/End: Complemental strand, 54141959 - 54141896
Alignment:
| Q |
12 |
acaatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacct |
75 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||| ||||||||||||||||| ||||||||| |
|
|
| T |
54141959 |
acaatctagaataaaaacatacatacaattggttgaaattaaaaagagatgatttgagttacct |
54141896 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #5
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 1 - 75
Target Start/End: Original strand, 52806560 - 52806635
Alignment:
| Q |
1 |
aacaaagtaagacaatctagaataaaaacattcatacaattggttgatatt-aaaaagagatgattcgagttacct |
75 |
Q |
| |
|
||||||||| |||| |||||||||||||||| ||||||||||||||||||| |||||||||||||| ||| ||||| |
|
|
| T |
52806560 |
aacaaagtatgacactctagaataaaaacatgcatacaattggttgatattaaaaaagagatgatttgaggtacct |
52806635 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 54; Significance: 6e-22; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 54; E-Value: 6e-22
Query Start/End: Original strand, 14 - 120
Target Start/End: Original strand, 11842635 - 11842749
Alignment:
| Q |
14 |
aatctagaataaaaacattcatacaattggttgatattaaaaagagatgattcgagttacc--------tgcatttgagatttgatgacgattggggaga |
105 |
Q |
| |
|
|||||||||||||||| | ||||||||||||||| ||||||||||||||||| |||||||| |||||||| |||||||||||||||||||| |
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|
| T |
11842635 |
aatctagaataaaaacgtacatacaattggttgaaattaaaaagagatgatttgagttacctgtttgtttgcatttgtactttgatgacgattggggaga |
11842734 |
T |
|
| Q |
106 |
cactcggttcctggc |
120 |
Q |
| |
|
||||||||| ||||| |
|
|
| T |
11842735 |
cactcggttgctggc |
11842749 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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