View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_4 (Length: 726)
Name: NF19266_low_4
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_4 |
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Alignment Details
Target: chr6 (Bit Score: 236; Significance: 1e-130; HSPs: 2)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 236; E-Value: 1e-130
Query Start/End: Original strand, 20 - 356
Target Start/End: Complemental strand, 28976195 - 28975855
Alignment:
| Q |
20 |
tactatcttccctaattattctctctcatctctcacctaccacaacatcaagctcatgatcccaactctcctccatactcttctcattcttctcaatttc |
119 |
Q |
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| T |
28976195 |
tactatcttccctaactattctctctcatctctcacctaccactacatcaatctcacgatcccaactctcctccatactcttctcattcttctgaatttc |
28976096 |
T |
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| Q |
120 |
tttgtgtactagggacaaccccctctctctctaannnnnnnn----ctccctaattgagaaacttgtaatgatgggtttgagataggttttgtgaattca |
215 |
Q |
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| T |
28976095 |
tttatgtactagggacaaccccctctctctctctctctaattttttctcactaattgagaaacttgtaatgatgggtttgagatagattttgtgaattca |
28975996 |
T |
|
| Q |
216 |
attcatatttgtttggtttgttcttgttgtggtgttgaaccaccgttatgttcaccatgtttgttggaatttttaaagaacaaagaaagaatcagaaagt |
315 |
Q |
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| T |
28975995 |
attcatacttgtttgggttgttcttgttgtggtgttgaaccaccgttatgttcaccatgtttgttggaatttgtaaagaacaaagatagaatcagaaagt |
28975896 |
T |
|
| Q |
316 |
aagaatagaaaacaaaattagattttccggtgagccattag |
356 |
Q |
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| T |
28975895 |
aagaataaaaaacaaaattagatttttcggtgagccattag |
28975855 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6; HSP #2
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 424 - 654
Target Start/End: Complemental strand, 28975788 - 28975558
Alignment:
| Q |
424 |
ttagatttttctatttgtaacacgactagtgtatgaactaaaattaactagcacacaataaatattatttcccatttggattattacatgatgaaattgt |
523 |
Q |
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| T |
28975788 |
ttagatttttctgtttgtaacacggctagtgtatgaactaaaattaactagcacacaataaatattatttcccatttggattattacatgatgaaattgt |
28975689 |
T |
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| Q |
524 |
tgacgaatcgggaaagaaagtaaataacttaaggtggattgaatgattaagagagaaagaggaaaagagagattgagctcaactgagtgtttcgaatctg |
623 |
Q |
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|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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| T |
28975688 |
tgacgaatcgggaaagaaagtaaataacttaaggtggactgaatgattaagagagaaagaggaaaagagagattgagctcaactgagtgtttcaaatctg |
28975589 |
T |
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| Q |
624 |
aagcttggtttggatgagaatggaagttaca |
654 |
Q |
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| T |
28975588 |
aagcttggtttggatgagaatggaagttaca |
28975558 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 51; Significance: 8e-20; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 51; E-Value: 8e-20
Query Start/End: Original strand, 264 - 326
Target Start/End: Complemental strand, 44631408 - 44631346
Alignment:
| Q |
264 |
tgttcaccatgtttgttggaatttttaaagaacaaagaaagaatcagaaagtaagaatagaaa |
326 |
Q |
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| T |
44631408 |
tgttcaccatgtttattggaattttcaaagaacaaagaaagaatgagaaagtaagaatagaaa |
44631346 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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