View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_40 (Length: 358)

Name: NF19266_low_40
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_40
NF19266_low_40
[»] chr2 (1 HSPs)
chr2 (10-344)||(2498143-2498485)


Alignment Details
Target: chr2 (Bit Score: 217; Significance: 1e-119; HSPs: 1)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 217; E-Value: 1e-119
Query Start/End: Original strand, 10 - 344
Target Start/End: Original strand, 2498143 - 2498485
Alignment:
Q  10 aagaatattgtgacatatgtatgtaactaaaaagatctgatcgaatatgtgtnnnnnnnnnnttatcttttttaatcgcttataaaaaactaaatttata 109  Q
    |||||||||||| |||||||||||||||||||||||||||||||||||||||          ||||||||||||||||||||||||||||||||||||||    
T  2498143 aagaatattgtg-catatgtatgtaactaaaaagatctgatcgaatatgtgtaaaaaaaa--ttatcttttttaatcgcttataaaaaactaaatttata 2498239  T
Q  110 tannnnnnnnnnaatgttgcttctgatccccaaaatcttattaatactatcttagacccatattgctttct------------gctatgctatggtagat 197  Q
    |           |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||            |||||||||||||||||    
T  2498240 t-tattttttttaatgttgcttctgatccccaaaatcttattaatactatcttagacccatattgctttcttttattactcctgctatgctatggtagat 2498338  T
Q  198 aacttccaaaaacactgctttcagttataaagatgtgttcttggtttctagcaaaattagagcatctcatgcctattacacgaatataagaaagaaagta 297  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2498339 aacttccaaaaacactgctttcagttataaagatgtgttcttgatttctagcaaaattagagcatctcatgcctattacacgaatataagaaagaaagta 2498438  T
Q  298 gcatatgttttttgaaaaaattctaatttttaaaatgtaacttttgt 344  Q
    |||||||||||||||||||||||||||||||||||||||| ||||||    
T  2498439 gcatatgttttttgaaaaaattctaatttttaaaatgtaagttttgt 2498485  T

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