View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_42 (Length: 354)
Name: NF19266_low_42
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_42 |
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Alignment Details
Target: chr8 (Bit Score: 237; Significance: 1e-131; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 237; E-Value: 1e-131
Query Start/End: Original strand, 83 - 327
Target Start/End: Original strand, 25024172 - 25024416
Alignment:
| Q |
83 |
cttagcctacacaatgaatatttgcatattacaatcagaacttcatgagctctcatgattctgacagttctaaaccaataatagacttcaaactatgatt |
182 |
Q |
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| T |
25024172 |
cttagcctacacaatgaatatttgcatattacaatcagaacttcatgagctctcatgattctgacagttctaaaccaataatagacttcaaactatgatt |
25024271 |
T |
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| Q |
183 |
gaacccaagagaaatgtcaaattaacatcttcaaaatttggtctttgattttcaacatgactcagcctcataccaattattgaaatcaaactcaaccttg |
282 |
Q |
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| T |
25024272 |
gaacccaagagaaatgtcaaattaacatcttcaaaatttggtctttgattttcaacatgactcagcttcataccaattattgaaatcaaactcaaccttg |
25024371 |
T |
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| Q |
283 |
atataaatgaacaatcctatcatgaacactcctcaagaaagaaag |
327 |
Q |
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| T |
25024372 |
atataaatgaacaatcctatcatgaacactcctaaagaaagaaag |
25024416 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 70; E-Value: 2e-31
Query Start/End: Original strand, 18 - 87
Target Start/End: Original strand, 25023203 - 25023272
Alignment:
| Q |
18 |
acaattgcattaaggaagattggaaattggcgtttatacaggttcaactattttcttcctcacttcttag |
87 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
25023203 |
acaattgcattaaggaagattggaaattggcgtttatacaggttcaactattttcttcctcacttcttag |
25023272 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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