View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19266_low_43 (Length: 351)
Name: NF19266_low_43
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_43 |
 | |
|
Alignment Details
Target: chr7 (Bit Score: 155; Significance: 3e-82; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 155; E-Value: 3e-82
Query Start/End: Original strand, 131 - 343
Target Start/End: Complemental strand, 34462472 - 34462260
Alignment:
| Q |
131 |
acacaccagctcttcaatatatattctttagttcatgatctattttttaaaaaattagtttacacgctcgattcatagattgaccactcatgtttatata |
230 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||||||| |||||||||||||||| |
|
|
| T |
34462472 |
acacaccagctcttcaatatatattctttagttcatgatctaattttttaaaaattagtttacacgctcgattcatagattgatcactcatgtttatata |
34462373 |
T |
|
| Q |
231 |
annnnnnngttaataataaatgttagtacgttaaatgttatgttattannnnnnncattgtccgtacttgaaccttgaactttgactcctcaactccttt |
330 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34462372 |
atttttttgttaataacaaatgttagtacgttaaatgttatgttattatttttttcattgtccgtacttgaaccttgaactttgactcctcaactccttt |
34462273 |
T |
|
| Q |
331 |
aatcacctatgct |
343 |
Q |
| |
|
||||||||||||| |
|
|
| T |
34462272 |
aatcacctatgct |
34462260 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 76; E-Value: 4e-35
Query Start/End: Original strand, 19 - 94
Target Start/End: Complemental strand, 34462583 - 34462508
Alignment:
| Q |
19 |
acacttaccttttccttgtttaatttgtgtcagtaaaattaagtaataatttagaagataaaaataataacaacaa |
94 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
34462583 |
acacttaccttttccttgtttaatttgtgtcagtaaaattaagtaataatttagaagataaaaataataacaacaa |
34462508 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 242 - 278
Target Start/End: Original strand, 8098188 - 8098224
Alignment:
| Q |
242 |
aataataaatgttagtacgttaaatgttatgttatta |
278 |
Q |
| |
|
||||||||||||||||| ||||| ||||||||||||| |
|
|
| T |
8098188 |
aataataaatgttagtatgttaattgttatgttatta |
8098224 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University