View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_44 (Length: 347)
Name: NF19266_low_44
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_44 |
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Alignment Details
Target: chr3 (Bit Score: 294; Significance: 1e-165; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 294; E-Value: 1e-165
Query Start/End: Original strand, 35 - 332
Target Start/End: Original strand, 42883893 - 42884190
Alignment:
| Q |
35 |
catcaaacatcaaaagcatgtgtgtaaatgagcatataaagagaagagatacgtgtagtgtaaaactagttagtttgaaaaagtgaaaaagaacataaca |
134 |
Q |
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| T |
42883893 |
catcaaacatcaaaagcatgtgtgtaaatgagcatataaagagaagagatacgtgtagtgtaaaactagttagtttgaaaaagtgaaaaagaacataaca |
42883992 |
T |
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| Q |
135 |
gaaaatggttgagtgagaggtaggtgtacgtacctttgcaagaggaattcttcagaagtttctcaacaagtgtgcgatcaatgatattgtcatcaacagc |
234 |
Q |
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| T |
42883993 |
gaaaatggttgagtgagaggtaggtgtacgtacctttgcaagaggaattcttcagaagtttctcaacaagtgtgcgatcaatgatattgtcatcaacagc |
42884092 |
T |
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| Q |
235 |
cagaacatgaggaatgtcaccattttccatcacccactttgaagaagaagaatcagaagccatgagtaatgacaatgaagaagttataagaaggtggt |
332 |
Q |
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| T |
42884093 |
cagaacatgaggaatgtcaccattttccatcacccactttgaagaagaagaatcagaagccatgagtaatgacaatgaacaagttataagaaggtggt |
42884190 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 87 - 330
Target Start/End: Complemental strand, 22984691 - 22984451
Alignment:
| Q |
87 |
gtgtagtgtaaaactagttagtttgaaaaagtgaaaaagaacataacagaaaatggttgagtgagaggtaggtgtacgtacctttgcaagaggaattctt |
186 |
Q |
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||||| ||||||| ||||||||| |||||||| |||||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
22984691 |
gtgtaatgtaaaagtagttagttcgaaaaagtaaaaaagaatataacataaaatggttgagtgagaggtaggtgtacgtacctttgcaagaggaattctt |
22984592 |
T |
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| Q |
187 |
cagaagtttctcaacaagtgtgcgatcaatgatattgtcatcaacagccagaacatgaggaatgtcaccattttccatcacccactttgaagaagaagaa |
286 |
Q |
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|| |||||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||||||||||||||||| |||||||||||| |||| |
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| T |
22984591 |
aaggtgtttctcaacaagtgtgcgatcaatgatattgtcgtcaacagcaagaacatgaggaatgtcaccattttccatcatccactttgaaga---agaa |
22984495 |
T |
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| Q |
287 |
tcagaagccatgagtaatgacaatgaagaagttataagaaggtg |
330 |
Q |
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| T |
22984494 |
tcagaagccatgagtaatgacaatgaagaagttataagaaggtg |
22984451 |
T |
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