View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_48 (Length: 338)
Name: NF19266_low_48
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_48 |
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Alignment Details
Target: chr2 (Bit Score: 275; Significance: 1e-154; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 275; E-Value: 1e-154
Query Start/End: Original strand, 24 - 305
Target Start/End: Complemental strand, 4275657 - 4275375
Alignment:
| Q |
24 |
ggtcaaagaaacaaaatctccatagtggtaaaaacagaagatgatgacctaaatcaaacatttgtttgtagaaaaagaaaaccaactaagaagggaagga |
123 |
Q |
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| T |
4275657 |
ggtcaaagaaacaaaatctccatagtggtaaaaacagaagatgatgacctaaatcaaacatttgtttgtagaaaaagaaaaccaactaagaagggaagga |
4275558 |
T |
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| Q |
124 |
taggtgtgagatttgatgaagtagaaggggacagaatagacatc-ccccggaaatacagggataaccgtacagtcttaaaataccctttattcagtttgt |
222 |
Q |
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| T |
4275557 |
taggtgtgagatttgatgaagtagaaggggacagaatagacatccccccggaaatacagggataaccgtacagtcttaaaataccctttattcagtttgt |
4275458 |
T |
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| Q |
223 |
gttattttttattggtttttaaccaacatataactttcactaccactactacagtcttttgttcttgtagcttgttctgtctt |
305 |
Q |
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| T |
4275457 |
gttattttttattggtttttaaccaacatataactttcactaccactactacagtcttttgttcttgtagcttgttctgtctt |
4275375 |
T |
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Target: chr4 (Bit Score: 39; Significance: 0.0000000000005; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 118 - 183
Target Start/End: Original strand, 34795002 - 34795068
Alignment:
| Q |
118 |
gaaggataggtgtgagatttgatgaagtagaaggggacagaatagacatcc-cccggaaatacaggg |
183 |
Q |
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|||||||| || |||||||| |||| |||||||||||||||||||||||| ||||||||||||||| |
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| T |
34795002 |
gaaggatatatgagagatttggtgaaatagaaggggacagaatagacatccgcccggaaatacaggg |
34795068 |
T |
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