View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_51 (Length: 334)

Name: NF19266_low_51
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_51
NF19266_low_51
[»] chr8 (2 HSPs)
chr8 (113-314)||(35779964-35780165)
chr8 (113-315)||(25319258-25319458)
[»] chr1 (4 HSPs)
chr1 (113-314)||(13113782-13113983)
chr1 (113-266)||(6607480-6607633)
chr1 (15-101)||(37342042-37342127)
chr1 (245-295)||(32446516-32446566)
[»] chr3 (5 HSPs)
chr3 (113-314)||(22937734-22937935)
chr3 (113-314)||(1233965-1234165)
chr3 (245-310)||(47771895-47771960)
chr3 (144-202)||(47771791-47771849)
chr3 (245-274)||(26045357-26045386)
[»] chr6 (2 HSPs)
chr6 (113-313)||(17797912-17798111)
chr6 (144-202)||(13545583-13545641)
[»] chr4 (4 HSPs)
chr4 (113-314)||(2824092-2824294)
chr4 (192-314)||(43041476-43041589)
chr4 (148-259)||(47246460-47246570)
chr4 (245-310)||(22024796-22024861)
[»] chr5 (1 HSPs)
chr5 (144-295)||(31805957-31806107)
[»] chr7 (3 HSPs)
chr7 (113-202)||(16361675-16361764)
chr7 (144-202)||(7635744-7635802)
chr7 (114-215)||(25988773-25988874)
[»] chr2 (5 HSPs)
chr2 (245-295)||(15348704-15348754)
chr2 (113-174)||(2468721-2468782)
chr2 (156-202)||(12564033-12564079)
chr2 (245-310)||(12564125-12564190)
chr2 (246-310)||(2468581-2468645)


Alignment Details
Target: chr8 (Bit Score: 121; Significance: 6e-62; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 113 - 314
Target Start/End: Original strand, 35779964 - 35780165
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtca 212  Q
    |||| ||||||||||||||||       ||||||||||||||||||||||||||||||| || || |||||||||| ||||||||||||| |||||| ||    
T  35779964 caagctaaaatgagatatattaaaattgcgcatgaaacaccctgcacaagatgtgcaaagagtgcgacaccgctaagtatttacaaacaacccggtgcca 35780063  T
Q  213 aaagaaccgacaccgtcaacaaaaataacaaaaaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaatg 312  Q
    || |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| || ||||||| |||||||| |||| |||| ||||||    
T  35780064 aaggaaccgacaccgtcaacaaaaataacaaaaaactactgatgcactcccatacaaaggagcggacgagtacatcagtcataataactgtaactaaatg 35780163  T
Q  313 aa 314  Q
    ||    
T  35780164 aa 35780165  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 115; E-Value: 2e-58
Query Start/End: Original strand, 113 - 315
Target Start/End: Original strand, 25319258 - 25319458
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtca 212  Q
    |||| ||||||||||||||||       || |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||| ||||| ||    
T  25319258 caagctaaaatgagatatattaaaaatgcgtatgaaacaccctgcacaagatgtgcaaagagtgccacaccgctaaatatttacaaacaattcggtgcca 25319357  T
Q  213 aaagaaccgacaccgtcaacaaaaataacaaaaaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaatg 312  Q
    ||||||||||||||||||||||||  ||||| ||| ||||||||||||||||||||||||||| || |||||||||||||||  |||| |||| ||||||    
T  25319358 aaagaaccgacaccgtcaacaaaa--aacaagaaactactgatgcactcccatacaaaggagcggacgagtacaccagtcattataactgtaactaaatg 25319455  T
Q  313 aaa 315  Q
    |||    
T  25319456 aaa 25319458  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 121; Significance: 6e-62; HSPs: 4)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 121; E-Value: 6e-62
Query Start/End: Original strand, 113 - 314
Target Start/End: Complemental strand, 13113983 - 13113782
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtca 212  Q
    |||| ||||||||||||||||       |||||||||||||||||||||||| |||||| || || ||||||||||  ||||||||||||||||||| ||    
T  13113983 caagctaaaatgagatatattaaaaatgcgcatgaaacaccctgcacaagatatgcaaagagtgcgacaccgctaagaatttacaaacaatccggtgcca 13113884  T
Q  213 aaagaaccgacaccgtcaacaaaaataacaaaaaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaatg 312  Q
    ||||||||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| || |||||||||||||||| |||| |||| ||||||    
T  13113883 aaagaaccgacaccgtcaacaaaaataacaaaaaactactgatgcactcccatataaaggagcggacgagtacaccagtcataataactgtaactaaatg 13113784  T
Q  313 aa 314  Q
    ||    
T  13113783 aa 13113782  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 93; E-Value: 3e-45
Query Start/End: Original strand, 113 - 266
Target Start/End: Original strand, 6607480 - 6607633
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtca 212  Q
    |||| ||||||||||||||||       ||||||||||||||||||||||||||||||| || || || ||||||| ||||||||||||| |||||| ||    
T  6607480 caagctaaaatgagatatattaaaattgcgcatgaaacaccctgcacaagatgtgcaaagagtgcgactccgctaagtatttacaaacaacccggtgcca 6607579  T
Q  213 aaagaaccgacaccgtcaacaaaaataacaaaaaattactgatgcactcccata 266  Q
    ||||||||||||||||||||||||||||||||||| |||| |||||||||||||    
T  6607580 aaagaaccgacaccgtcaacaaaaataacaaaaaactactaatgcactcccata 6607633  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 63; E-Value: 2e-27
Query Start/End: Original strand, 15 - 101
Target Start/End: Complemental strand, 37342127 - 37342042
Alignment:
Q  15 acaaattaaattagtactgtctagataatatttttactttcaaaaactacctagatatatgatgatgcagttttaaattcatcaatg 101  Q
    ||||||||||||||||||||||||||||||| ||  |||||||||| || |||||||||||||||||||||||||||||||||||||    
T  37342127 acaaattaaattagtactgtctagataatatgttg-ctttcaaaaaatatctagatatatgatgatgcagttttaaattcatcaatg 37342042  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 39; E-Value: 0.0000000000005
Query Start/End: Original strand, 245 - 295
Target Start/End: Complemental strand, 32446566 - 32446516
Alignment:
Q  245 aaattactgatgcactcccatacaaaggagcagatgagtacaccagtcata 295  Q
    ||||||||||||||||||||||||||||||| |||| || |||||||||||    
T  32446566 aaattactgatgcactcccatacaaaggagcggatgtgtccaccagtcata 32446516  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 105; Significance: 2e-52; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 113 - 314
Target Start/End: Complemental strand, 22937935 - 22937734
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtca 212  Q
    |||| ||||||||||||||||       || ||||||||||||||| |||||||||||| || || |||||| ||| ||||||||||||| ||| || ||    
T  22937935 caagctaaaatgagatatattaaaattgcgaatgaaacaccctgcataagatgtgcaaagagtgcgacaccgttaagtatttacaaacaacccgatgcca 22937836  T
Q  213 aaagaaccgacaccgtcaacaaaaataacaaaaaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaatg 312  Q
    |||| |||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||| || || ||||||||||||| |||| |||||||||||    
T  22937835 aaaggaccgacaccgtcaacaaaaataacaaaaaactactgatgcactcccatccaaaggagcggacgaatacaccagtcataataactgtaattaaatg 22937736  T
Q  313 aa 314  Q
    ||    
T  22937735 aa 22937734  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 97; E-Value: 1e-47
Query Start/End: Original strand, 113 - 314
Target Start/End: Complemental strand, 1234165 - 1233965
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtca 212  Q
    |||| ||||||||||||||||       || |||||||||| |||| |||||||||||| || || |||| ||||| ||||||||||||| | |||||||    
T  1234165 caagctaaaatgagatatattaatattacgaatgaaacaccttgcataagatgtgcaaagagtgcaacactgctaagtatttacaaacaacctggtgtca 1234066  T
Q  213 aaagaaccgacaccgtcaacaaaaataacaaaaaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaatg 312  Q
    ||||  |||||||||||||||||||||||||||||||| || |||||| |||||||||||||| || |||||||||||||||| |||| |||||||||||    
T  1234065 aaagggccgacaccgtcaacaaaaataacaaaaaattattg-tgcacttccatacaaaggagcggacgagtacaccagtcataataactgtaattaaatg 1233967  T
Q  313 aa 314  Q
    ||    
T  1233966 aa 1233965  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 47771895 - 47771960
Alignment:
Q  245 aaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaa 310  Q
    ||||||||| ||||||||||||||||||||  |||| || ||||| ||||| |||| |||||||||    
T  47771895 aaattactggtgcactcccatacaaaggaggggatgtgtccaccaatcataataacagtaattaaa 47771960  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Original strand, 47771791 - 47771849
Alignment:
Q  144 atgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaa 202  Q
    ||||||||| |||||||||| |||||||||| |  |||| |||||||||||||| ||||    
T  47771791 atgaaacactctgcacaagacgtgcaaaaagtgagacacggctaaatatttacagacaa 47771849  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 274
Target Start/End: Original strand, 26045357 - 26045386
Alignment:
Q  245 aaattactgatgcactcccatacaaaggag 274  Q
    ||||||||||||||||||||||||||||||    
T  26045357 aaattactgatgcactcccatacaaaggag 26045386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 104; Significance: 8e-52; HSPs: 2)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 104; E-Value: 8e-52
Query Start/End: Original strand, 113 - 313
Target Start/End: Original strand, 17797912 - 17798111
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtca 212  Q
    |||| ||||||||||||||||       |||||||||||||||||| |||||||||||| || || |||||||||| |||||  ||||||||||||| ||    
T  17797912 caagctaaaatgagatatattaaaaatgcgcatgaaacaccctgcataagatgtgcaaagagtgcgacaccgctaagtatttgtaaacaatccggtgcca 17798011  T
Q  213 aaagaaccgacaccgtcaacaaaaataacaaaaaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaatg 312  Q
     ||||| |||||||||||||||||| ||||||||| ||||||||||||||||||||||||||| || |||||||||||||||| |||| |||| ||||||    
T  17798012 gaagaatcgacaccgtcaacaaaaa-aacaaaaaactactgatgcactcccatacaaaggagcggacgagtacaccagtcataataactgtaactaaatg 17798110  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 13545641 - 13545583
Alignment:
Q  144 atgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaa 202  Q
    ||||||||||||||||||||| || |||||| |  || |||||||||||||||| ||||    
T  13545641 atgaaacaccctgcacaagatatgtaaaaagtgagacgccgctaaatatttacagacaa 13545583  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 98; Significance: 3e-48; HSPs: 4)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 98; E-Value: 3e-48
Query Start/End: Original strand, 113 - 314
Target Start/End: Complemental strand, 2824294 - 2824092
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtca 212  Q
    |||||||||||||||||||||       || |||||||||| ||||||||||||||||| || |  ||||| |||| ||||||||||||| | |||| ||    
T  2824294 caagttaaaatgagatatattaatattgcgaatgaaacaccatgcacaagatgtgcaaagagtgggacaccactaagtatttacaaacaacctggtgcca 2824195  T
Q  213 aaagaaccgacaccgtcaa-caaaaataacaaaaaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaat 311  Q
    ||||  ||||||||||||| |||||||||||||||||||| ||||||||||||||||||| ||| || |||||||||||||||| |||| ||||||||||    
T  2824194 aaagggccgacaccgtcaatcaaaaataacaaaaaattacggatgcactcccatacaaagaagcggacgagtacaccagtcataataactgtaattaaat 2824095  T
Q  312 gaa 314  Q
    |||    
T  2824094 gaa 2824092  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 55; E-Value: 1e-22
Query Start/End: Original strand, 192 - 314
Target Start/End: Complemental strand, 43041589 - 43041476
Alignment:
Q  192 tttacaaacaatccggtgtcaaaagaaccgacaccgtcaacaaaaataacaaaaaattactgatgcactcccatacaaaggagcagatgagtacaccagt 291  Q
    ||||||||||| |||||| |||||||||||||||||||||||||||         | ||||||||||||||||||||||||||| || ||||||||||||    
T  43041589 tttacaaacaacccggtgccaaaagaaccgacaccgtcaacaaaaa---------actactgatgcactcccatacaaaggagcggacgagtacaccagt 43041499  T
Q  292 catagtaaccgtaattaaatgaa 314  Q
    |||| |||| |||| ||| ||||    
T  43041498 cataataactgtaactaagtgaa 43041476  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 48; E-Value: 2e-18
Query Start/End: Original strand, 148 - 259
Target Start/End: Original strand, 47246460 - 47246570
Alignment:
Q  148 aacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtcaaaagaaccgacaccgtcaacaaaaataacaaaaaa 247  Q
    |||||| ||||||||||||||||| ||  | | |||||||| ||||||||||||| | | || ||||||  ||||||| |||| ||||||||||||||||    
T  47246460 aacaccatgcacaagatgtgcaaagagtacgataccgctaagtatttacaaacaacctgatgccaaaagggccgacac-gtcatcaaaaataacaaaaaa 47246558  T
Q  248 ttactgatgcac 259  Q
    ||||||||||||    
T  47246559 ttactgatgcac 47246570  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 34; E-Value: 0.0000000005
Query Start/End: Original strand, 245 - 310
Target Start/End: Complemental strand, 22024861 - 22024796
Alignment:
Q  245 aaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaa 310  Q
    ||||||||| ||||||||||||||||||||| |||| || || || ||||| |||| |||||||||    
T  22024861 aaattactggtgcactcccatacaaaggagcggatgtgtccatcaatcataataacagtaattaaa 22024796  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 52; Significance: 9e-21; HSPs: 1)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 52; E-Value: 9e-21
Query Start/End: Original strand, 144 - 295
Target Start/End: Complemental strand, 31806107 - 31805957
Alignment:
Q  144 atgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtcaaaagaaccgacaccgtcaacaaaaataacaa 243  Q
    |||||||||| || ||||||||| |||| || || | ||   ||| |||||||| |||| |  ||| ||||||  ||||||| || ||||||||||||||    
T  31806107 atgaaacaccttgtacaagatgtacaaagagtgcgatacaattaagtatttacatacaacctagtgccaaaagggccgacactgttaacaaaaataacaa 31806008  T
Q  244 aaaattactgatgcactcccatacaaaggagcagatgagtacaccagtcata 295  Q
    ||||||||||||||||||||||||||| |||| || |||||||| |||||||    
T  31806007 aaaattactgatgcactcccatacaaa-gagcggacgagtacacgagtcata 31805957  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 45; Significance: 1e-16; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 45; E-Value: 1e-16
Query Start/End: Original strand, 113 - 202
Target Start/End: Complemental strand, 16361764 - 16361675
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaa 202  Q
    ||||||||||||| |||||||       || |||||||||||||||||||||||||||| || || |||||||||| |||||||||||||    
T  16361764 caagttaaaatgacatatattaatattgcgaatgaaacaccctgcacaagatgtgcaaagagtgcgacaccgctaagtatttacaaacaa 16361675  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 144 - 202
Target Start/End: Complemental strand, 7635802 - 7635744
Alignment:
Q  144 atgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaa 202  Q
    |||||||| ||||||||||| |||||||||| |  ||||||||||||||||||| ||||    
T  7635802 atgaaacatcctgcacaagacgtgcaaaaagtgagacaccgctaaatatttacagacaa 7635744  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 114 - 215
Target Start/End: Complemental strand, 25988874 - 25988773
Alignment:
Q  114 aagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaatccggtgtcaa 213  Q
    |||||||||||| |||||||       || ||||||||||||| ||||||||||||||||| |  ||||||| || |||||||| |||| | |||| |||    
T  25988874 aagttaaaatgaaatatattaatattgcggatgaaacaccctgtacaagatgtgcaaaaagtgagacaccgcaaagtatttacagacaacctggtgccaa 25988775  T
Q  214 aa 215  Q
    ||    
T  25988774 aa 25988773  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2 (Bit Score: 35; Significance: 0.0000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 35; E-Value: 0.0000000001
Query Start/End: Original strand, 245 - 295
Target Start/End: Original strand, 15348704 - 15348754
Alignment:
Q  245 aaattactgatgcactcccatacaaaggagcagatgagtacaccagtcata 295  Q
    ||||||||||||||||||||||||||||||| ||||  | |||||||||||    
T  15348704 aaattactgatgcactcccatacaaaggagcggatgtttccaccagtcata 15348754  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 113 - 174
Target Start/End: Complemental strand, 2468782 - 2468721
Alignment:
Q  113 caagttaaaatgagatatattnnnnnnncgcatgaaacaccctgcacaagatgtgcaaaaag 174  Q
    |||| ||||||||||||||||       || |||||||||||||||||||||||||||||||    
T  2468782 caagctaaaatgagatatattaatattgcggatgaaacaccctgcacaagatgtgcaaaaag 2468721  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 156 - 202
Target Start/End: Original strand, 12564033 - 12564079
Alignment:
Q  156 gcacaagatgtgcaaaaagcgccacaccgctaaatatttacaaacaa 202  Q
    |||||||| ||||||||||||  ||||||||||||||||||| ||||    
T  12564033 gcacaagacgtgcaaaaagcgagacaccgctaaatatttacagacaa 12564079  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 245 - 310
Target Start/End: Original strand, 12564125 - 12564190
Alignment:
Q  245 aaattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaa 310  Q
    ||||||||| |||||||||||||| |||||  |||| || ||||| ||||| |||| |||||||||    
T  12564125 aaattactggtgcactcccatacagaggaggggatgtgtccaccaatcataataacagtaattaaa 12564190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 246 - 310
Target Start/End: Complemental strand, 2468645 - 2468581
Alignment:
Q  246 aattactgatgcactcccatacaaaggagcagatgagtacaccagtcatagtaaccgtaattaaa 310  Q
    |||||||| ||||||||||||||||||||| ||||    ||||||||||| |||  |||||||||    
T  2468645 aattactggtgcactcccatacaaaggagcggatgtacccaccagtcataataattgtaattaaa 2468581  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University