View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

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 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_53 (Length: 323)

Name: NF19266_low_53
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_53
NF19266_low_53
[»] chr3 (1 HSPs)
chr3 (10-307)||(52494437-52494734)


Alignment Details
Target: chr3 (Bit Score: 290; Significance: 1e-163; HSPs: 1)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 290; E-Value: 1e-163
Query Start/End: Original strand, 10 - 307
Target Start/End: Original strand, 52494437 - 52494734
Alignment:
Q  10 agcaaagggataaaaataatcatacttcataacccatcttgtcaatcatctccttcactacttgatatagagtaggtctagcctgatacatcaaccatat 109  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52494437 agcaaagggataaaaataatcatacttcataacccatcttgtcaatcatctccttcactacttgatatagagtaggtctagcctgatacatcaaccatat 52494536  T
Q  110 agttagttgtttggttcatgaggatatgttacagaaaaacggaatcattttggatccaacattttactactaatgcaatggaaaataattgaaaatagaa 209  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||    
T  52494537 agttagttgtttggttcatgaggatatgttacagaaaaacggaatcattttggatccaacattttactactaatgcaatggaaaataactgaaaatagaa 52494636  T
Q  210 gacatactatttgaacattgcaaacggctgccattaacaagacacttggcatctccactacaaataaagatgaaccacaaaattacaatggaagagat 307  Q
    ||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  52494637 gacatactatttgaacattgcgaacggctgccattaacaagacacttggcatctccactacaaataaagatgaaccacaaaattacaatggaagagat 52494734  T

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