View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_54 (Length: 322)

Name: NF19266_low_54
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_54
NF19266_low_54
[»] chr8 (6 HSPs)
chr8 (80-234)||(34810671-34810830)
chr8 (80-124)||(4054316-4054360)
chr8 (77-122)||(22719439-22719484)
chr8 (77-122)||(27325757-27325802)
chr8 (77-122)||(31249551-31249596)
chr8 (77-121)||(24479236-24479280)
[»] chr7 (3 HSPs)
chr7 (87-122)||(44189347-44189382)
chr7 (77-121)||(30941386-30941430)
chr7 (77-121)||(44895599-44895643)
[»] chr6 (5 HSPs)
chr6 (87-122)||(18737592-18737627)
chr6 (77-124)||(25811865-25811912)
chr6 (77-123)||(34047385-34047431)
chr6 (77-122)||(8098622-8098667)
chr6 (77-121)||(22079590-22079634)
[»] chr3 (5 HSPs)
chr3 (77-120)||(41308926-41308969)
chr3 (77-123)||(26014810-26014856)
chr3 (89-123)||(38671616-38671650)
chr3 (77-121)||(46623907-46623951)
chr3 (77-121)||(52939653-52939697)
[»] chr1 (8 HSPs)
chr1 (87-122)||(37275070-37275105)
chr1 (77-124)||(37685328-37685375)
chr1 (77-124)||(37700143-37700190)
chr1 (77-122)||(3159375-3159420)
chr1 (77-121)||(2571635-2571679)
chr1 (77-121)||(8350223-8350267)
chr1 (89-121)||(37985425-37985457)
chr1 (77-121)||(41677351-41677395)
[»] scaffold0098 (1 HSPs)
scaffold0098 (87-121)||(49295-49329)
[»] chr5 (5 HSPs)
chr5 (77-123)||(1764222-1764268)
chr5 (87-121)||(18258830-18258864)
chr5 (77-123)||(28306159-28306205)
chr5 (94-122)||(35301482-35301510)
chr5 (92-124)||(39807756-39807788)
[»] chr4 (6 HSPs)
chr4 (77-123)||(5622456-5622502)
chr4 (77-122)||(37997255-37997300)
chr4 (77-121)||(23369359-23369403)
chr4 (77-121)||(37297049-37297093)
chr4 (87-123)||(39440482-39440518)
chr4 (89-121)||(44539736-44539768)
[»] chr2 (2 HSPs)
chr2 (77-121)||(18254236-18254280)
chr2 (89-121)||(43487379-43487411)


Alignment Details
Target: chr8 (Bit Score: 120; Significance: 2e-61; HSPs: 6)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 120; E-Value: 2e-61
Query Start/End: Original strand, 80 - 234
Target Start/End: Original strand, 34810671 - 34810830
Alignment:
Q  80 tcacaggagttataaaaaatggttgttcaaataacatttctcattaattaatgta-----gatgatccactagaactaacacaaatgaaattgtaagaat 174  Q
    ||||| ||||| ||||||||||||||||||||| |||||||| |||||||||| |     ||||||||||||||||||||||||||||||||||||||||    
T  34810671 tcacaagagttgtaaaaaatggttgttcaaatatcatttctctttaattaatgcaatgcagatgatccactagaactaacacaaatgaaattgtaagaat 34810770  T
Q  175 ctattcttttcaataaaaataatccttgtgagtggattattaagaatgaaatctttggtg 234  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  34810771 ctattcttttcaataaaaataatccttgtgagtggattattaagaatgaaatctttggtg 34810830  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 80 - 124
Target Start/End: Original strand, 4054316 - 4054360
Alignment:
Q  80 tcacaggagttataaaaaatggttgttcaaataacatttctcatt 124  Q
    |||||| |||| ||||||||||||||||||||| |||||||||||    
T  4054316 tcacagaagttgtaaaaaatggttgttcaaatatcatttctcatt 4054360  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 22719484 - 22719439
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctca 122  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  22719484 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 22719439  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 27325802 - 27325757
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctca 122  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  27325802 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 27325757  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 31249551 - 31249596
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctca 122  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  31249551 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 31249596  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr8; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 24479280 - 24479236
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||||| ||||||||||||||||||| ||||||||    
T  24479280 ttgtcacaaaagttatcaaaaatggttgttcaaatatcatttctc 24479236  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 32; Significance: 0.000000007; HSPs: 3)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 44189347 - 44189382
Alignment:
Q  87 agttataaaaaatggttgttcaaataacatttctca 122  Q
    |||||||||||||||||||||||||| |||||||||    
T  44189347 agttataaaaaatggttgttcaaatatcatttctca 44189382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 30941430 - 30941386
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  30941430 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 30941386  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 44895599 - 44895643
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  44895599 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 44895643  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 18737592 - 18737627
Alignment:
Q  87 agttataaaaaatggttgttcaaataacatttctca 122  Q
    |||||||||||||||||||||||||| |||||||||    
T  18737592 agttataaaaaatggttgttcaaatatcatttctca 18737627  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 25811865 - 25811912
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctcatt 124  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||||    
T  25811865 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 25811912  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 34047431 - 34047385
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctcat 123  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||||    
T  34047431 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 34047385  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Original strand, 8098622 - 8098667
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctca 122  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  8098622 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 8098667  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 22079590 - 22079634
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  22079590 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 22079634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3 (Bit Score: 32; Significance: 0.000000007; HSPs: 5)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 120
Target Start/End: Complemental strand, 41308969 - 41308926
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttct 120  Q
    ||||||||  |||||||||||||||||||||||||| |||||||    
T  41308969 ttgtcacaaaagttataaaaaatggttgttcaaatatcatttct 41308926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 26014856 - 26014810
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctcat 123  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||||    
T  26014856 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 26014810  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 89 - 123
Target Start/End: Complemental strand, 38671650 - 38671616
Alignment:
Q  89 ttataaaaaatggttgttcaaataacatttctcat 123  Q
    |||||||||||||||||||||||| ||||||||||    
T  38671650 ttataaaaaatggttgttcaaatatcatttctcat 38671616  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 46623951 - 46623907
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  46623951 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 46623907  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr3; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 52939697 - 52939653
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  52939697 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 52939653  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 32; Significance: 0.000000007; HSPs: 8)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 87 - 122
Target Start/End: Original strand, 37275070 - 37275105
Alignment:
Q  87 agttataaaaaatggttgttcaaataacatttctca 122  Q
    |||||||||||||||||||||||||| |||||||||    
T  37275070 agttataaaaaatggttgttcaaatatcatttctca 37275105  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 124
Target Start/End: Complemental strand, 37685375 - 37685328
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctcatt 124  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||||    
T  37685375 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 37685328  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000007
Query Start/End: Original strand, 77 - 124
Target Start/End: Original strand, 37700143 - 37700190
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctcatt 124  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||||    
T  37700143 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcatt 37700190  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 3159420 - 3159375
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctca 122  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  3159420 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 3159375  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 2571679 - 2571635
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  2571679 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 2571635  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 8350223 - 8350267
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  8350223 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 8350267  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Original strand, 37985425 - 37985457
Alignment:
Q  89 ttataaaaaatggttgttcaaataacatttctc 121  Q
    |||||||||||||||||||||| ||||||||||    
T  37985425 ttataaaaaatggttgttcaaaaaacatttctc 37985457  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 41677351 - 41677395
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||| | |||||||||||| ||||||||||| ||||||||    
T  41677351 ttgtcacagaaattataaaaaatgattgttcaaatatcatttctc 41677395  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0098 (Bit Score: 31; Significance: 0.00000003; HSPs: 1)
Name: scaffold0098
Description:

Target: scaffold0098; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Complemental strand, 49329 - 49295
Alignment:
Q  87 agttataaaaaatggttgttcaaataacatttctc 121  Q
    |||||||||||||||||||||||||| ||||||||    
T  49329 agttataaaaaatggttgttcaaatatcatttctc 49295  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5 (Bit Score: 31; Significance: 0.00000003; HSPs: 5)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 1764268 - 1764222
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctcat 123  Q
    ||||||||| |||| ||||||||| ||||||||||| ||||||||||    
T  1764268 ttgtcacagaagttgtaaaaaatgattgttcaaatatcatttctcat 1764222  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 87 - 121
Target Start/End: Original strand, 18258830 - 18258864
Alignment:
Q  87 agttataaaaaatggttgttcaaataacatttctc 121  Q
    |||||||||||||||||||||||||| ||||||||    
T  18258830 agttataaaaaatggttgttcaaatatcatttctc 18258864  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #3
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Original strand, 28306159 - 28306205
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctcat 123  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||||    
T  28306159 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 28306205  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 94 - 122
Target Start/End: Complemental strand, 35301510 - 35301482
Alignment:
Q  94 aaaaatggttgttcaaataacatttctca 122  Q
    |||||||||||||||||||||||||||||    
T  35301510 aaaaatggttgttcaaataacatttctca 35301482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr5; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 92 - 124
Target Start/End: Original strand, 39807756 - 39807788
Alignment:
Q  92 taaaaaatggttgttcaaataacatttctcatt 124  Q
    ||||||||||||||||||||| |||||||||||    
T  39807756 taaaaaatggttgttcaaatatcatttctcatt 39807788  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 31; Significance: 0.00000003; HSPs: 6)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 31; E-Value: 0.00000003
Query Start/End: Original strand, 77 - 123
Target Start/End: Complemental strand, 5622502 - 5622456
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctcat 123  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||||    
T  5622502 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctcat 5622456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 77 - 122
Target Start/End: Complemental strand, 37997300 - 37997255
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctca 122  Q
    ||||||||  |||| ||||||||||||||||||||| |||||||||    
T  37997300 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctca 37997255  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 23369359 - 23369403
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  23369359 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 23369403  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Complemental strand, 37297093 - 37297049
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  37297093 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 37297049  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 87 - 123
Target Start/End: Complemental strand, 39440518 - 39440482
Alignment:
Q  87 agttataaaaaatggttgttcaaataacatttctcat 123  Q
    |||| ||||||||||||||||||||| ||||||||||    
T  39440518 agttgtaaaaaatggttgttcaaatatcatttctcat 39440482  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 44539768 - 44539736
Alignment:
Q  89 ttataaaaaatggttgttcaaataacatttctc 121  Q
    |||||||||||||||||||||||| ||||||||    
T  44539768 ttataaaaaatggttgttcaaatatcatttctc 44539736  T

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Target: chr2 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 77 - 121
Target Start/End: Original strand, 18254236 - 18254280
Alignment:
Q  77 ttgtcacaggagttataaaaaatggttgttcaaataacatttctc 121  Q
    ||||||||  |||| ||||||||||||||||||||| ||||||||    
T  18254236 ttgtcacaaaagttgtaaaaaatggttgttcaaatatcatttctc 18254280  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 89 - 121
Target Start/End: Complemental strand, 43487411 - 43487379
Alignment:
Q  89 ttataaaaaatggttgttcaaataacatttctc 121  Q
    |||||||||||||||||||||||| ||||||||    
T  43487411 ttataaaaaatggttgttcaaatatcatttctc 43487379  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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