View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_55 (Length: 314)
Name: NF19266_low_55
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_55 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 20 - 299
Target Start/End: Complemental strand, 45991766 - 45991488
Alignment:
| Q |
20 |
atattcatcaatggtgtgttggaggtgtcttatagcatcatggatatgtttgtaccactccaaacttcttcatgtaccttcacccccaaaatgaatgtag |
119 |
Q |
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| T |
45991766 |
atattcatcaatggtgtgttggaggtgtcttatagcatcatgggtatgtttgtaccactccaaacttcttcatgtaccttcacccc-aaaatgaatgtag |
45991668 |
T |
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| Q |
120 |
tgtgtttctttgctttaacatacatctaacatctatagaattgtttgttttattccttctttcatccaatttattatgttgtggagtgcatggagcagtg |
219 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||| |
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| T |
45991667 |
tgtgtttctttgctttaacatacatctaacatctatagaattgtttgttttattccttctttcatccaatttattatgttgtggagtgtatggaacagtg |
45991568 |
T |
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| Q |
220 |
gacttcatgttgaatacatgatttacactaaaagctttaaatgctttggatgcatattcaccacctccgttagttctcaa |
299 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
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| T |
45991567 |
gacttcatgttgaatacatgatttacactaaaagctttaaatgctttggatgcatattcatcacctccgttagttctcaa |
45991488 |
T |
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