View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_58 (Length: 306)
Name: NF19266_low_58
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_58 |
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Alignment Details
Target: chr5 (Bit Score: 183; Significance: 5e-99; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 183; E-Value: 5e-99
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 40947284 - 40947590
Alignment:
| Q |
1 |
caacgctacttctccacctctgttctcctgcatcgacacttccattgtcgtcttcgtc----ctgcatcggaaggattatcttctactttcacagccgcg |
96 |
Q |
| |
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||||||||||||||| |||| ||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| || |
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| T |
40947284 |
caacgctacttctccgcctccgttctccggcatcgacgcttccatcgtcgtctccgtccgtcctgcatcggaaggattatcttctactttcacagccacg |
40947383 |
T |
|
| Q |
97 |
gagaatggttccgcttggattgctatcggtggtcaactctccagctacgactggaatctaatccattccataaccgtttgtactcatcacgacgagatca |
196 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| || | |||| ||| || |||| |
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| T |
40947384 |
gagaatggttccacttggattgctatcggtggtcaactctccagctacgactggaatctaatccattccgtaaccgtccgttcacatctcgatgaaatca |
40947483 |
T |
|
| Q |
197 |
attcaatttgcagagtctggccggagagtgccgccgccaaaactgaa------tctgttgctggtaattattttaaattacacagagaaaaatgttttgt |
290 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
40947484 |
attcaatttgcagagtctggccagagagtgccgccgctggaactgaatctgtttctgttgctggtaattattttaaattacacagagaaaaatgttttgt |
40947583 |
T |
|
| Q |
291 |
tgatgat |
297 |
Q |
| |
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| ||||| |
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|
| T |
40947584 |
ttatgat |
40947590 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 175; Significance: 3e-94; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 175; E-Value: 3e-94
Query Start/End: Original strand, 1 - 297
Target Start/End: Original strand, 26956014 - 26956320
Alignment:
| Q |
1 |
caacgctacttctccacctctgttctcctgcatcgacacttccattgtcgtcttcgtc----ctgcatcggaaggattatcttctactttcacagccgcg |
96 |
Q |
| |
|
||||||||||||||| |||| ||||||| |||||||| ||||||| ||||||| |||| ||||||||||||||||||||||||||||||||||| || |
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| T |
26956014 |
caacgctacttctccgcctccgttctccggcatcgacgcttccatcgtcgtctccgtccgtcctgcatcggaaggattatcttctactttcacagccacg |
26956113 |
T |
|
| Q |
97 |
gagaatggttccgcttggattgctatcggtggtcaactctccagctacgactggaatctaatccattccataaccgtttgtactcatcacgacgagatca |
196 |
Q |
| |
|
|||||||||||| |||||||||||||||| ||||||||| ||||||||||||||||||||||||||||| ||||||| || | |||| ||| || |||| |
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|
| T |
26956114 |
gagaatggttccacttggattgctatcggaggtcaactcaccagctacgactggaatctaatccattccgtaaccgtccgttcacatctcgatgaaatca |
26956213 |
T |
|
| Q |
197 |
attcaatttgcagagtctggccggagagtgccgccgccaaaactgaa------tctgttgctggtaattattttaaattacacagagaaaaatgttttgt |
290 |
Q |
| |
|
|||||||||||||||||||||| |||||||||||||| ||||||| ||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
26956214 |
attcaatttgcagagtctggccagagagtgccgccgctggaactgaatctgtttctgttgctggtaattattttaaattacacagagaaaaatgttttgt |
26956313 |
T |
|
| Q |
291 |
tgatgat |
297 |
Q |
| |
|
| ||||| |
|
|
| T |
26956314 |
ttatgat |
26956320 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 133; Significance: 4e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 133; E-Value: 4e-69
Query Start/End: Original strand, 5 - 254
Target Start/End: Original strand, 34315092 - 34315345
Alignment:
| Q |
5 |
gctacttctccacctctgttctcctgcatcgacacttccattgtcgtcttcgt----cctgcatcggaaggattatcttctactttcacagccgcggaga |
100 |
Q |
| |
|
|||||||||||||||| ||||||| |||||||| ||||||| || | || ||| ||||||||||||||||| |||||||||||||| || ||||||| |
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| T |
34315092 |
gctacttctccacctccgttctccggcatcgacgcttccatcgttgcctccgtccgacctgcatcggaaggattgtcttctactttcaccgctgcggaga |
34315191 |
T |
|
| Q |
101 |
atggttccgcttggattgctatcggtggtcaactctccagctacgactggaatctaatccattccataaccgtttgtactcatcacgacgagatcaattc |
200 |
Q |
| |
|
| ||||||| |||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||| ||||||| | ||| ||||||||||| |
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| T |
34315192 |
acggttccgtttggattgctcacggtggtcaactctccagctacgactggaatctaatccattccgcaaccgttcgtactcacctcgatgagatcaattc |
34315291 |
T |
|
| Q |
201 |
aatttgcagagtctggccggagagtgccgccgccaaaactgaatctgttgctgg |
254 |
Q |
| |
|
||||||||||||||||||||||| |||||||| ||||||||||| |||||| |
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|
| T |
34315292 |
aatttgcagagtctggccggagattgccgccgttggaactgaatctgatgctgg |
34315345 |
T |
|
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