View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_60 (Length: 300)
Name: NF19266_low_60
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_60 |
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Alignment Details
Target: chr3 (Bit Score: 254; Significance: 1e-141; HSPs: 3)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 254; E-Value: 1e-141
Query Start/End: Original strand, 7 - 289
Target Start/End: Complemental strand, 43360190 - 43359906
Alignment:
| Q |
7 |
aatcagagagagactccttctaatgtcacttgaacacatgaaaaataagttcacatgtaggagaggcctttgagcata--aggatacttctctttctttt |
104 |
Q |
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| T |
43360190 |
aatcagagagggactccttctaatgtcacttgaacacatgaaaaataagttcacatgtaggagaggcctttgagcatataaggatacttctctttctttt |
43360091 |
T |
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| Q |
105 |
ttgaggctatcacagcaacaaattttcatagtttgcaaaactcttgcattattaagaatgtatgttactaactgaacctcaccatgttggcctctgaagt |
204 |
Q |
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| T |
43360090 |
ttgaggctatcacagcaacaaattttcatagtttgcaaaactcttgcattattaagaatgtatgttgctaactgaacctcaccatgttggcctctgaagt |
43359991 |
T |
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| Q |
205 |
accacagtgtgcaagttttaaggtgtaatgaaatgcactgcggaacagatgcagggtctacccaattttcctggtcattgtctct |
289 |
Q |
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| T |
43359990 |
accaaagtgtgcaagttttaaggtgtaatgaaatgcaccgcggaacagatgcagggtctacccaattttcctggtcaatgtctct |
43359906 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 93 - 282
Target Start/End: Original strand, 17641098 - 17641287
Alignment:
| Q |
93 |
tctctttcttttttgaggctatcacagcaacaaattttcatagtttgcaaaactcttgcattattaagaatgtatgttactaactgaacctcaccatgtt |
192 |
Q |
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| T |
17641098 |
tctctttctattttgaggtcttcactgcaatgtattttcatggtttgcaaaacttttgcattcttcagaatgtttcttgccaatagaagctcgccttctt |
17641197 |
T |
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| Q |
193 |
ggcctctgaagtaccacagtgtgcaagttttaaggtgtaatgaaatgcactgcggaacagatgcagggtctacccaattttcctggtcat |
282 |
Q |
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| T |
17641198 |
ggcctatgaagtttagaactttgcaaattttaaggtgtaatgaaaaacattgcggaacaaatattgggtccacccaattttcttggtcat |
17641287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 45 - 154
Target Start/End: Complemental strand, 43362480 - 43362372
Alignment:
| Q |
45 |
tgaaaaataagttcacatgtaggagaggcctttgagcataaggatacttctctttcttttttgaggctatcacagcaacaaattttcatagtttgcaaaa |
144 |
Q |
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|||| ||||| ||||||||||||||||||| ||| |||||||| | |||||||||| |||||| |||| |||| | |||| ||| | |||||||| |
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| T |
43362480 |
tgaataataacttcacatgtaggagaggcccttggacataaggacaattctctttctagtttgagttcgtcactgcaatagatttccat-ggttgcaaaa |
43362382 |
T |
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| Q |
145 |
ctcttgcatt |
154 |
Q |
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| T |
43362381 |
ctcttgcatt |
43362372 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.0000001; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 214 - 251
Target Start/End: Original strand, 1333250 - 1333287
Alignment:
| Q |
214 |
tgcaagttttaaggtgtaatgaaatgcactgcggaaca |
251 |
Q |
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| T |
1333250 |
tgcaagttgtaaggtgtaatgaaaggcactgcggaaca |
1333287 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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