View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_68 (Length: 285)

Name: NF19266_low_68
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_68
NF19266_low_68
[»] chr5 (4 HSPs)
chr5 (11-254)||(2707802-2708047)
chr5 (36-70)||(6217721-6217755)
chr5 (12-64)||(16127050-16127100)
chr5 (28-64)||(34034905-34034941)
[»] chr8 (2 HSPs)
chr8 (29-68)||(21145708-21145747)
chr8 (27-69)||(7574367-7574409)
[»] chr6 (4 HSPs)
chr6 (29-64)||(516063-516098)
chr6 (29-64)||(10219537-10219572)
chr6 (27-64)||(21020851-21020888)
chr6 (29-61)||(9307534-9307566)
[»] chr1 (7 HSPs)
chr1 (29-64)||(31134795-31134830)
chr1 (29-68)||(32670051-32670090)
chr1 (29-64)||(32669785-32669820)
chr1 (29-64)||(34177556-34177591)
chr1 (32-68)||(6541002-6541038)
chr1 (27-63)||(31406165-31406201)
chr1 (27-67)||(36144782-36144822)
[»] chr3 (6 HSPs)
chr3 (29-70)||(14984401-14984441)
chr3 (27-67)||(41898089-41898129)
chr3 (30-64)||(23567371-23567405)
chr3 (35-64)||(14984731-14984760)
chr3 (28-69)||(34294175-34294216)
chr3 (16-64)||(46848430-46848476)
[»] chr7 (2 HSPs)
chr7 (32-68)||(30839975-30840011)
chr7 (35-64)||(18942737-18942766)
[»] chr4 (3 HSPs)
chr4 (29-64)||(12034382-12034417)
chr4 (31-64)||(11298456-11298489)
chr4 (29-65)||(51151092-51151128)


Alignment Details
Target: chr5 (Bit Score: 226; Significance: 1e-124; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 226; E-Value: 1e-124
Query Start/End: Original strand, 11 - 254
Target Start/End: Original strand, 2707802 - 2708047
Alignment:
Q  11 cagagactattttgacattactcgttacacattcagggaccaaaatgactattatcccaacatatatttagactaattttgttgtcaca-ttttgtatat 109  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  2707802 cagagactattttgacattactcgttacacattcagggaccaaaatgactattaccccaacatatatttagactaattttgttgtcacacttttgtatat 2707901  T
Q  110 atatttctaaaactatagtaattgagtggagcaatgtagattt-gttattttcattcgtatgattgaatagcatatatacttattagtgttggagtatcg 208  Q
    ||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  2707902 atatttctaaaactatagtaattgagtggagcaatgtagattttgttattttcattcgtatgattgaatagcatatatacttattagtgttggagtatcg 2708001  T
Q  209 gcattgctcagaaattacacaatgatggaactcgaatccatgatga 254  Q
    ||||||||||||||||||||||||||||||||||||||||||||||    
T  2708002 gcattgctcagaaattacacaatgatggaactcgaatccatgatga 2708047  T

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Target: chr5; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 36 - 70
Target Start/End: Original strand, 6217721 - 6217755
Alignment:
Q  36 tacacattcagggaccaaaatgactattatcccaa 70  Q
    |||||||||| ||||||||||||||||||||||||    
T  6217721 tacacattcatggaccaaaatgactattatcccaa 6217755  T

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Target: chr5; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 12 - 64
Target Start/End: Complemental strand, 16127100 - 16127050
Alignment:
Q  12 agagactattttgacattactcgttacacattcagggaccaaaatgactatta 64  Q
    |||||||||| ||||  ||||| ||||||||| ||||||||||||||||||||    
T  16127100 agagactattgtgac--tactccttacacatttagggaccaaaatgactatta 16127050  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 28 - 64
Target Start/End: Original strand, 34034905 - 34034941
Alignment:
Q  28 ttactcgttacacattcagggaccaaaatgactatta 64  Q
    |||||| |||||||||||||||| |||||||||||||    
T  34034905 ttactcattacacattcagggactaaaatgactatta 34034941  T

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Target: chr8 (Bit Score: 36; Significance: 0.00000000003; HSPs: 2)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 21145708 - 21145747
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactattatccc 68  Q
    ||||||||||||||||||| ||||||||||||||||||||    
T  21145708 tactcgttacacattcaggaaccaaaatgactattatccc 21145747  T

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Target: chr8; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 27 - 69
Target Start/End: Complemental strand, 7574409 - 7574367
Alignment:
Q  27 attactcgttacacattcagggaccaaaatgactattatccca 69  Q
    |||||| |||||||||||| ||||||||||| |||||||||||    
T  7574409 attacttgttacacattcaaggaccaaaatgtctattatccca 7574367  T

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Target: chr6 (Bit Score: 36; Significance: 0.00000000003; HSPs: 4)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 516063 - 516098
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactatta 64  Q
    ||||||||||||||||||||||||||||||||||||    
T  516063 tactcgttacacattcagggaccaaaatgactatta 516098  T

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Target: chr6; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 10219572 - 10219537
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactatta 64  Q
    ||||||||||||||||||||||||||||||||||||    
T  10219572 tactcgttacacattcagggaccaaaatgactatta 10219537  T

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Target: chr6; HSP #3
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 27 - 64
Target Start/End: Complemental strand, 21020888 - 21020851
Alignment:
Q  27 attactcgttacacattcagggaccaaaatgactatta 64  Q
    ||||||||||| | ||||||||||||||||||||||||    
T  21020888 attactcgttatatattcagggaccaaaatgactatta 21020851  T

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Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 61
Target Start/End: Original strand, 9307534 - 9307566
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgacta 61  Q
    |||||||||||||||||||||| ||||||||||    
T  9307534 tactcgttacacattcagggactaaaatgacta 9307566  T

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Target: chr1 (Bit Score: 36; Significance: 0.00000000003; HSPs: 7)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 31134795 - 31134830
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactatta 64  Q
    ||||||||||||||||||||||||||||||||||||    
T  31134795 tactcgttacacattcagggaccaaaatgactatta 31134830  T

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Target: chr1; HSP #2
Raw Score: 36; E-Value: 0.00000000003
Query Start/End: Original strand, 29 - 68
Target Start/End: Original strand, 32670051 - 32670090
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactattatccc 68  Q
    ||||||||||||||||||||| ||||||||||||||||||    
T  32670051 tactcgttacacattcagggatcaaaatgactattatccc 32670090  T

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Target: chr1; HSP #3
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 32669820 - 32669785
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactatta 64  Q
    ||||||||||||||||| ||||||||||||||||||    
T  32669820 tactcgttacacattcatggaccaaaatgactatta 32669785  T

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Target: chr1; HSP #4
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 64
Target Start/End: Original strand, 34177556 - 34177591
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactatta 64  Q
    ||||| ||||||||||||||||||||||||||||||    
T  34177556 tactcattacacattcagggaccaaaatgactatta 34177591  T

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Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 32 - 68
Target Start/End: Complemental strand, 6541038 - 6541002
Alignment:
Q  32 tcgttacacattcagggaccaaaatgactattatccc 68  Q
    ||||||||||||||||||  |||||||||||||||||    
T  6541038 tcgttacacattcagggattaaaatgactattatccc 6541002  T

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Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 63
Target Start/End: Complemental strand, 31406201 - 31406165
Alignment:
Q  27 attactcgttacacattcagggaccaaaatgactatt 63  Q
    |||||||||||||||| ||||||| ||||||||||||    
T  31406201 attactcgttacacatgcagggacgaaaatgactatt 31406165  T

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Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 27 - 67
Target Start/End: Complemental strand, 36144822 - 36144782
Alignment:
Q  27 attactcgttacacattcagggaccaaaatgactattatcc 67  Q
    ||||||| ||||| ||||| |||||||||||||||||||||    
T  36144822 attactcattacatattcaaggaccaaaatgactattatcc 36144782  T

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Target: chr3 (Bit Score: 34; Significance: 0.0000000004; HSPs: 6)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 34; E-Value: 0.0000000004
Query Start/End: Original strand, 29 - 70
Target Start/End: Complemental strand, 14984441 - 14984401
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactattatcccaa 70  Q
    ||||||||||||||||||| ||||||||||||||||||||||    
T  14984441 tactcgttacacattcagg-accaaaatgactattatcccaa 14984401  T

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Target: chr3; HSP #2
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 27 - 67
Target Start/End: Original strand, 41898089 - 41898129
Alignment:
Q  27 attactcgttacacattcagggaccaaaatgactattatcc 67  Q
    ||||||||||||||||||| |||||||||| ||||||||||    
T  41898089 attactcgttacacattcaaggaccaaaataactattatcc 41898129  T

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Target: chr3; HSP #3
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 30 - 64
Target Start/End: Original strand, 23567371 - 23567405
Alignment:
Q  30 actcgttacacattcagggaccaaaatgactatta 64  Q
    |||||||||||||||||||| ||||||||||||||    
T  23567371 actcgttacacattcagggatcaaaatgactatta 23567405  T

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Target: chr3; HSP #4
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Original strand, 14984731 - 14984760
Alignment:
Q  35 ttacacattcagggaccaaaatgactatta 64  Q
    ||||||||||||||||||||||||||||||    
T  14984731 ttacacattcagggaccaaaatgactatta 14984760  T

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Target: chr3; HSP #5
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 28 - 69
Target Start/End: Original strand, 34294175 - 34294216
Alignment:
Q  28 ttactcgttacacattcagggaccaaaatgactattatccca 69  Q
    |||||||||||||||| | ||| |||||||||||||||||||    
T  34294175 ttactcgttacacatttaaggatcaaaatgactattatccca 34294216  T

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Target: chr3; HSP #6
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 16 - 64
Target Start/End: Original strand, 46848430 - 46848476
Alignment:
Q  16 actattttgacattactcgttacacattcagggaccaaaatgactatta 64  Q
    |||||||||||  ||||| |||||||||||||||||||| |||||||||    
T  46848430 actattttgac--tactcattacacattcagggaccaaagtgactatta 46848476  T

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Target: chr7 (Bit Score: 33; Significance: 0.000000002; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 32 - 68
Target Start/End: Original strand, 30839975 - 30840011
Alignment:
Q  32 tcgttacacattcagggaccaaaatgactattatccc 68  Q
    |||||| ||||||||||||||||||||||||||||||    
T  30839975 tcgttatacattcagggaccaaaatgactattatccc 30840011  T

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Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 35 - 64
Target Start/End: Complemental strand, 18942766 - 18942737
Alignment:
Q  35 ttacacattcagggaccaaaatgactatta 64  Q
    ||||||||||||||||||||||||||||||    
T  18942766 ttacacattcagggaccaaaatgactatta 18942737  T

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Target: chr4 (Bit Score: 32; Significance: 0.000000006; HSPs: 3)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 29 - 64
Target Start/End: Complemental strand, 12034417 - 12034382
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactatta 64  Q
    ||||||||| ||||||||||||||||||||||||||    
T  12034417 tactcgttatacattcagggaccaaaatgactatta 12034382  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 30; E-Value: 0.0000001
Query Start/End: Original strand, 31 - 64
Target Start/End: Complemental strand, 11298489 - 11298456
Alignment:
Q  31 ctcgttacacattcagggaccaaaatgactatta 64  Q
    |||||||||||||||||||| |||||||||||||    
T  11298489 ctcgttacacattcagggactaaaatgactatta 11298456  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 29 - 65
Target Start/End: Original strand, 51151092 - 51151128
Alignment:
Q  29 tactcgttacacattcagggaccaaaatgactattat 65  Q
    ||||||||||||||||| |||||||||| ||||||||    
T  51151092 tactcgttacacattcaaggaccaaaataactattat 51151128  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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