View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_71 (Length: 275)
Name: NF19266_low_71
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_71 |
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Alignment Details
Target: chr2 (Bit Score: 249; Significance: 1e-138; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 249; E-Value: 1e-138
Query Start/End: Original strand, 7 - 259
Target Start/End: Original strand, 3343464 - 3343716
Alignment:
| Q |
7 |
aaataatatgagcaagtgaaaatggagcaccaatactacaattaactaatttacctgataactctccacgtcgtttaataaacggcaaatgaccattagt |
106 |
Q |
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| T |
3343464 |
aaataatatgagcaagtgaaaatggagcaccaatactacaattaactaatttacctgataactctccacgtcgtttaataaacggcaaatgaccattagt |
3343563 |
T |
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| Q |
107 |
agttttgttatgttttcatatggtgttagcctcagtttcttggttggtaagcttggttttagaaaacatgaggatgaaagtaccatgatatgtgacccaa |
206 |
Q |
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| T |
3343564 |
agttttgttatgttttcatatggtgttagcctcagtttcttggttggtaagcttggtttcagaaaacatgaggatgaaagtaccatgatatgtgacccaa |
3343663 |
T |
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| Q |
207 |
ttgaagtcatgcctgtttttaagtaagcatcaatggatggtttgtgtccattt |
259 |
Q |
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| T |
3343664 |
ttgaagtcatgcctgtttttaagtaagcatcaatggatggtttgtgtccattt |
3343716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 101; E-Value: 4e-50
Query Start/End: Original strand, 55 - 259
Target Start/End: Original strand, 3368368 - 3368572
Alignment:
| Q |
55 |
atttacctgataactctccacgtcgtttaataaacggcaaatgaccattagtagttttgttatgttttcatatggtgttagcctcagtttcttggttggt |
154 |
Q |
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|||||||||||||||| | || || ||||||||||| ||||||| ||||||||||||||||||||||||||||| ||||||| | || ||||||||||| |
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| T |
3368368 |
atttacctgataactcacaacatcatttaataaacgacaaatgatcattagtagttttgttatgttttcatatgctgttagcttgagcgtcttggttggt |
3368467 |
T |
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| Q |
155 |
aagcttggttttagaaaacatgaggatgaaagtaccatgatatgtgacccaattgaagtcatgcctgtttttaagtaagcatcaatggatggtttgtgtc |
254 |
Q |
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| T |
3368468 |
aagcttggtttcagaaaacatgaggatggaagcaccaagacatgtgggcaagctgaagtcatgcctgttttgaggtaacaatcaagggatggtttgtgtc |
3368567 |
T |
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| Q |
255 |
cattt |
259 |
Q |
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| T |
3368568 |
cattt |
3368572 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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