View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_73 (Length: 263)

Name: NF19266_low_73
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_73
NF19266_low_73
[»] chr4 (8 HSPs)
chr4 (72-241)||(18890486-18890658)
chr4 (18-49)||(47416878-47416909)
chr4 (18-47)||(23867247-23867276)
chr4 (18-51)||(27184964-27184997)
chr4 (18-47)||(53407939-53407968)
chr4 (17-46)||(55685699-55685728)
chr4 (17-45)||(4390777-4390805)
chr4 (18-50)||(27397095-27397127)
[»] chr2 (5 HSPs)
chr2 (18-50)||(4452850-4452882)
chr2 (18-47)||(8687725-8687754)
chr2 (18-46)||(15569962-15569990)
chr2 (17-45)||(37000250-37000278)
chr2 (18-50)||(38880079-38880111)
[»] chr5 (4 HSPs)
chr5 (17-52)||(35640704-35640739)
chr5 (17-50)||(2179510-2179543)
chr5 (17-45)||(1710555-1710583)
chr5 (19-47)||(3036728-3036756)
[»] chr3 (4 HSPs)
chr3 (17-52)||(43526511-43526546)
chr3 (18-46)||(33392472-33392500)
chr3 (18-46)||(39470629-39470657)
chr3 (18-50)||(40479401-40479433)
[»] chr6 (6 HSPs)
chr6 (18-48)||(32732572-32732602)
chr6 (18-51)||(2443213-2443246)
chr6 (18-50)||(559100-559132)
chr6 (17-45)||(5300925-5300953)
chr6 (19-47)||(14226926-14226954)
chr6 (17-45)||(28077249-28077277)
[»] chr1 (9 HSPs)
chr1 (18-52)||(39827356-39827390)
chr1 (18-46)||(323632-323660)
chr1 (18-50)||(7710306-7710338)
chr1 (18-46)||(29683485-29683513)
chr1 (18-46)||(30780083-30780111)
chr1 (18-50)||(31149785-31149817)
chr1 (17-45)||(33632725-33632753)
chr1 (18-50)||(41150563-41150595)
chr1 (17-45)||(49219789-49219817)
[»] chr8 (1 HSPs)
chr8 (17-45)||(10619630-10619658)
[»] chr7 (2 HSPs)
chr7 (17-45)||(44597424-44597452)
chr7 (18-46)||(48831420-48831448)


Alignment Details
Target: chr4 (Bit Score: 139; Significance: 8e-73; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 139; E-Value: 8e-73
Query Start/End: Original strand, 72 - 241
Target Start/End: Original strand, 18890486 - 18890658
Alignment:
Q  72 gggttaatcgagattaataaacattgatttctcattatgtggcacagcaacactacaatataatttgagtttcatcgcgatttagagattaaacaaaacc 171  Q
    ||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||| |||| ||||||||||||    
T  18890486 gggttaatcgagatttataaacattgatttctcattatgtggcacagcaacactgcaatataatttgagtttcatcgcgattcagagtttaaacaaaacc 18890585  T
Q  172 acaagccaatttcaacaatcaatggtttattcatggattcgaattttcggtac---acgatagtgaaatcgta 241  Q
    ||||||||||||||||||||||||||||||||||||||| |||||||||||||   |||||||||||||||||    
T  18890586 acaagccaatttcaacaatcaatggtttattcatggatttgaattttcggtacacgacgatagtgaaatcgta 18890658  T

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Target: chr4; HSP #2
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 18 - 49
Target Start/End: Complemental strand, 47416909 - 47416878
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaa 49  Q
    ||||||||||||||||||||||||||||||||    
T  47416909 ctatccgctatttttaccaaacagagccgaaa 47416878  T

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Target: chr4; HSP #3
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 23867276 - 23867247
Alignment:
Q  18 ctatccgctatttttaccaaacagagccga 47  Q
    ||||||||||||||||||||||||||||||    
T  23867276 ctatccgctatttttaccaaacagagccga 23867247  T

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Target: chr4; HSP #4
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Complemental strand, 27184997 - 27184964
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaag 51  Q
    |||||||||||||||||||||||||||| |||||    
T  27184997 ctatccgctatttttaccaaacagagcctaaaag 27184964  T

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Target: chr4; HSP #5
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Original strand, 53407939 - 53407968
Alignment:
Q  18 ctatccgctatttttaccaaacagagccga 47  Q
    ||||||||||||||||||||||||||||||    
T  53407939 ctatccgctatttttaccaaacagagccga 53407968  T

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Target: chr4; HSP #6
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 46
Target Start/End: Original strand, 55685699 - 55685728
Alignment:
Q  17 actatccgctatttttaccaaacagagccg 46  Q
    ||||||||||||||||||||||||||||||    
T  55685699 actatccgctatttttaccaaacagagccg 55685728  T

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Target: chr4; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 4390805 - 4390777
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  4390805 actatccgctatttttaccaaacagagcc 4390777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 27397127 - 27397095
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaa 50  Q
    |||||||||||||||||||||||||||| ||||    
T  27397127 ctatccgctatttttaccaaacagagccaaaaa 27397095  T

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Target: chr2 (Bit Score: 33; Significance: 0.000000001; HSPs: 5)
Name: chr2
Description:

Target: chr2; HSP #1
Raw Score: 33; E-Value: 0.000000001
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 4452882 - 4452850
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaa 50  Q
    |||||||||||||||||||||||||||||||||    
T  4452882 ctatccgctatttttaccaaacagagccgaaaa 4452850  T

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Target: chr2; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 47
Target Start/End: Complemental strand, 8687754 - 8687725
Alignment:
Q  18 ctatccgctatttttaccaaacagagccga 47  Q
    ||||||||||||||||||||||||||||||    
T  8687754 ctatccgctatttttaccaaacagagccga 8687725  T

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Target: chr2; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 15569962 - 15569990
Alignment:
Q  18 ctatccgctatttttaccaaacagagccg 46  Q
    |||||||||||||||||||||||||||||    
T  15569962 ctatccgctatttttaccaaacagagccg 15569990  T

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Target: chr2; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 37000250 - 37000278
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  37000250 actatccgctatttttaccaaacagagcc 37000278  T

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Target: chr2; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 38880111 - 38880079
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaa 50  Q
    |||||||||||||||||||||||||||| ||||    
T  38880111 ctatccgctatttttaccaaacagagccaaaaa 38880079  T

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Target: chr5 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr5
Description:

Target: chr5; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 35640704 - 35640739
Alignment:
Q  17 actatccgctatttttaccaaacagagccgaaaaga 52  Q
    ||||||||||||||||||||||||||||| ||||||    
T  35640704 actatccgctatttttaccaaacagagcctaaaaga 35640739  T

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Target: chr5; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 17 - 50
Target Start/End: Original strand, 2179510 - 2179543
Alignment:
Q  17 actatccgctatttttaccaaacagagccgaaaa 50  Q
    ||||||||||||||||||||||||||||| ||||    
T  2179510 actatccgctatttttaccaaacagagcctaaaa 2179543  T

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Target: chr5; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 1710583 - 1710555
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  1710583 actatccgctatttttaccaaacagagcc 1710555  T

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Target: chr5; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 3036756 - 3036728
Alignment:
Q  19 tatccgctatttttaccaaacagagccga 47  Q
    |||||||||||||||||||||||||||||    
T  3036756 tatccgctatttttaccaaacagagccga 3036728  T

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Target: chr3 (Bit Score: 32; Significance: 0.000000006; HSPs: 4)
Name: chr3
Description:

Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000006
Query Start/End: Original strand, 17 - 52
Target Start/End: Original strand, 43526511 - 43526546
Alignment:
Q  17 actatccgctatttttaccaaacagagccgaaaaga 52  Q
    ||||||||||||||||||||||||||||| ||||||    
T  43526511 actatccgctatttttaccaaacagagcctaaaaga 43526546  T

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Target: chr3; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 33392472 - 33392500
Alignment:
Q  18 ctatccgctatttttaccaaacagagccg 46  Q
    |||||||||||||||||||||||||||||    
T  33392472 ctatccgctatttttaccaaacagagccg 33392500  T

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Target: chr3; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 39470629 - 39470657
Alignment:
Q  18 ctatccgctatttttaccaaacagagccg 46  Q
    |||||||||||||||||||||||||||||    
T  39470629 ctatccgctatttttaccaaacagagccg 39470657  T

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Target: chr3; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 40479433 - 40479401
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaa 50  Q
    |||||||||||||||||||||||||||| ||||    
T  40479433 ctatccgctatttttaccaaacagagcctaaaa 40479401  T

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Target: chr6 (Bit Score: 31; Significance: 0.00000002; HSPs: 6)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 48
Target Start/End: Original strand, 32732572 - 32732602
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaa 48  Q
    |||||||||||||||||||||||||||||||    
T  32732572 ctatccgctatttttaccaaacagagccgaa 32732602  T

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Target: chr6; HSP #2
Raw Score: 30; E-Value: 0.00000009
Query Start/End: Original strand, 18 - 51
Target Start/End: Original strand, 2443213 - 2443246
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaag 51  Q
    |||||||||||||||||||||||||||| |||||    
T  2443213 ctatccgctatttttaccaaacagagcctaaaag 2443246  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Original strand, 559100 - 559132
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaa 50  Q
    |||||||||||||||||||||||||||| ||||    
T  559100 ctatccgctatttttaccaaacagagcctaaaa 559132  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 5300953 - 5300925
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  5300953 actatccgctatttttaccaaacagagcc 5300925  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 19 - 47
Target Start/End: Complemental strand, 14226954 - 14226926
Alignment:
Q  19 tatccgctatttttaccaaacagagccga 47  Q
    |||||||||||||||||||||||||||||    
T  14226954 tatccgctatttttaccaaacagagccga 14226926  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 28077249 - 28077277
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  28077249 actatccgctatttttaccaaacagagcc 28077277  T

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Target: chr1 (Bit Score: 31; Significance: 0.00000002; HSPs: 9)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 18 - 52
Target Start/End: Original strand, 39827356 - 39827390
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaaga 52  Q
    |||||||||||||||||||||||||||| ||||||    
T  39827356 ctatccgctatttttaccaaacagagcctaaaaga 39827390  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 323632 - 323660
Alignment:
Q  18 ctatccgctatttttaccaaacagagccg 46  Q
    |||||||||||||||||||||||||||||    
T  323632 ctatccgctatttttaccaaacagagccg 323660  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #3
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 7710338 - 7710306
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaa 50  Q
    |||||||||||||||||||||||||||| ||||    
T  7710338 ctatccgctatttttaccaaacagagccaaaaa 7710306  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #4
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 29683513 - 29683485
Alignment:
Q  18 ctatccgctatttttaccaaacagagccg 46  Q
    |||||||||||||||||||||||||||||    
T  29683513 ctatccgctatttttaccaaacagagccg 29683485  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #5
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Original strand, 30780083 - 30780111
Alignment:
Q  18 ctatccgctatttttaccaaacagagccg 46  Q
    |||||||||||||||||||||||||||||    
T  30780083 ctatccgctatttttaccaaacagagccg 30780111  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #6
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 31149817 - 31149785
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaa 50  Q
    |||||||||||||||||||||||||||| ||||    
T  31149817 ctatccgctatttttaccaaacagagcctaaaa 31149785  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #7
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 33632725 - 33632753
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  33632725 actatccgctatttttaccaaacagagcc 33632753  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #8
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 50
Target Start/End: Complemental strand, 41150595 - 41150563
Alignment:
Q  18 ctatccgctatttttaccaaacagagccgaaaa 50  Q
    |||||||||||||||||||||||||||| ||||    
T  41150595 ctatccgctatttttaccaaacagagcctaaaa 41150563  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1; HSP #9
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Complemental strand, 49219817 - 49219789
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  49219817 actatccgctatttttaccaaacagagcc 49219789  T

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Target: chr8 (Bit Score: 29; Significance: 0.0000004; HSPs: 1)
Name: chr8
Description:

Target: chr8; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 10619630 - 10619658
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  10619630 actatccgctatttttaccaaacagagcc 10619658  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7 (Bit Score: 29; Significance: 0.0000004; HSPs: 2)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 17 - 45
Target Start/End: Original strand, 44597424 - 44597452
Alignment:
Q  17 actatccgctatttttaccaaacagagcc 45  Q
    |||||||||||||||||||||||||||||    
T  44597424 actatccgctatttttaccaaacagagcc 44597452  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr7; HSP #2
Raw Score: 29; E-Value: 0.0000004
Query Start/End: Original strand, 18 - 46
Target Start/End: Complemental strand, 48831448 - 48831420
Alignment:
Q  18 ctatccgctatttttaccaaacagagccg 46  Q
    |||||||||||||||||||||||||||||    
T  48831448 ctatccgctatttttaccaaacagagccg 48831420  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



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