View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_74 (Length: 262)
Name: NF19266_low_74
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_74 |
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Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 9 - 247
Target Start/End: Original strand, 614250 - 614488
Alignment:
| Q |
9 |
gaagaatatcgtgttcctggacgacgatgttgtggttcagaaggaactttctgatcttttttccattgatttgaatgggaatgtcaatggagctgttgag |
108 |
Q |
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| T |
614250 |
gaagaaaatcgtgttcctggacgacgatgttgtggttcagaaggatctttctgatcttttttccattgatttgaatgggaatgtcaatggagctgttgag |
614349 |
T |
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| Q |
109 |
acatgcaaggagacatttcatagataccatacatacttgaactattctcatcctcttataagagcacattttgatccggatgcatgcgggtgggcatttg |
208 |
Q |
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| T |
614350 |
acatgcaaggagacatttcatagataccatacatacttgaactattctcatcctcttataagagcacattttgatctggatgcatgcgggtgggcatttg |
614449 |
T |
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| Q |
209 |
ggatgaatgtatttgatttggttgagtggaggaaaaata |
247 |
Q |
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| T |
614450 |
ggatgaatgtatttgatttggttgagtggaggaaaaata |
614488 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 9 - 245
Target Start/End: Original strand, 4620170 - 4620406
Alignment:
| Q |
9 |
gaagaatatcgtgttcctggacgacgatgttgtggttcagaaggaactttctgatcttttttccattgatttgaatgggaatgtcaatggagctgttgag |
108 |
Q |
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| T |
4620170 |
gaagaagattgtgttcctggacgatgacgtcgtggttcagaaggatctctctgatcttttttcaattgatttgaatgggaatgttaatggagctgttgag |
4620269 |
T |
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| Q |
109 |
acatgcaaggagacatttcatagataccatacatacttgaactattctcatcctcttataagagcacattttgatccggatgcatgcgggtgggcatttg |
208 |
Q |
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| T |
4620270 |
acatgcatggagacatttcatagataccataaatacttgaactattctcatcctcttataagagctcattttgatcccgatgcatgcggatgggcatttg |
4620369 |
T |
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| Q |
209 |
ggatgaatgtatttgatttggttgagtggaggaaaaa |
245 |
Q |
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| T |
4620370 |
ggatgaatgtatttgatttggttgaatggaggaaaaa |
4620406 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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