View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19266_low_75 (Length: 261)
Name: NF19266_low_75
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_75 |
 | |
|
Alignment Details
Target: chr1 (Bit Score: 209; Significance: 1e-114; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 209; E-Value: 1e-114
Query Start/End: Original strand, 18 - 251
Target Start/End: Complemental strand, 7653073 - 7652840
Alignment:
| Q |
18 |
atgtggatagatatttaataaaataaggtcttaatttgtaaagttgtgcaaacccatggcgggtttgtcttgttagagtgtatgtgccctttgtaaagtg |
117 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7653073 |
atgtggatagatatttaataaaataaggtcttaatttgtaaagttgtgcaaacccatggcgggtttgtcttgttagagtgtatgtgccctttgtaaagtg |
7652974 |
T |
|
| Q |
118 |
tagttgaaaataacatgcacttatatttggatgaactccgtcaatattttgnnnnnnnatgaataggtacaatattttgtgttggaggttaatggatcaa |
217 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| |||||||||||| |||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
7652973 |
tagttgaaaataacatgcacttatatttggatgaactctgtcaatattttgtttttttatgaataggtacaatattttgtgttggaggttaatggatcaa |
7652874 |
T |
|
| Q |
218 |
atgataatattggacaaatctcaagttacctttg |
251 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| |
|
|
| T |
7652873 |
atgataatattggacaaatctcaagttacctttg |
7652840 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University