View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_76 (Length: 261)
Name: NF19266_low_76
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_76 |
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Alignment Details
Target: chr4 (Bit Score: 229; Significance: 1e-126; HSPs: 4)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 229; E-Value: 1e-126
Query Start/End: Original strand, 15 - 243
Target Start/End: Original strand, 8674633 - 8674861
Alignment:
| Q |
15 |
tctcaaacaataaactacattgagtcctcttgcaacggtaccctctaccctactctatgtattcgttgccttaacaaattttccagttcaaccataaatg |
114 |
Q |
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| T |
8674633 |
tctcaaacaataaactacattgagtcctcttgcaacggtaccctctaccctactctatgtattcgttgccttaacaaattttccagttcaaccataaatg |
8674732 |
T |
|
| Q |
115 |
gacctcaacacttagctcaagttgccttatccgttagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctat |
214 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
8674733 |
gacctcaacacttagctcaagttgccttatccgttagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctat |
8674832 |
T |
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| Q |
215 |
tgatcacaacaacaagaggatgtacctaa |
243 |
Q |
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| T |
8674833 |
tgatcacaacaacaagaggatgtacctaa |
8674861 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #2
Raw Score: 157; E-Value: 1e-83
Query Start/End: Original strand, 15 - 243
Target Start/End: Complemental strand, 8696402 - 8696174
Alignment:
| Q |
15 |
tctcaaacaataaactacattgagtcctcttgcaacggtaccctctaccctactctatgtattcgttgccttaacaaattttccagttcaaccataaatg |
114 |
Q |
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|||||||||||||||||||| |||||||||||||| ||||||||||||||| | |||| ||||||||||| ||||| ||||||| ||||||||||||| |
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| T |
8696402 |
tctcaaacaataaactacatagagtcctcttgcaatggtaccctctaccctgatttatgcattcgttgcctaaacaagttttccaaatcaaccataaatg |
8696303 |
T |
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| Q |
115 |
gacctcaacacttagctcaagttgccttatccgttagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctat |
214 |
Q |
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|||||||||||||||| || |||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
8696302 |
gacctcaacacttagcacatgttgccttattcgcgagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggccaaggaactcaaagctat |
8696203 |
T |
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| Q |
215 |
tgatcacaacaacaagaggatgtacctaa |
243 |
Q |
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||||||||||||||| |||||||| |||| |
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| T |
8696202 |
tgatcacaacaacaaaaggatgtatctaa |
8696174 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #3
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 16 - 243
Target Start/End: Complemental strand, 8687832 - 8687605
Alignment:
| Q |
16 |
ctcaaacaataaactacattgagtcctcttgcaacggtaccctctaccctactctatgtattcgttgccttaacaaattttccagttcaaccataaatgg |
115 |
Q |
| |
|
|||||||||| | |||||| |||||||||||||| ||||||||||||||| | | || |||||||||||||| || ||||||| |||||||||||||| |
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| T |
8687832 |
ctcaaacaatgacctacatagagtcctcttgcaatggtaccctctaccctgatttgtgcattcgttgccttaagaagttttccaaatcaaccataaatgg |
8687733 |
T |
|
| Q |
116 |
acctcaacacttagctcaagttgccttatccgttagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctatt |
215 |
Q |
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||||||||||||||| | |||||||||||||| |||||||| |||||||||||||||||||| ||||||||||||||||| |||||||||||||||||| |
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| T |
8687732 |
acctcaacacttagcaaatgttgccttatccgtgagcctctcgagagcattgcaaacaagaggataccttttgaatgcggcaaaggaactcaaagctatt |
8687633 |
T |
|
| Q |
216 |
gatcacaacaacaagaggatgtacctaa |
243 |
Q |
| |
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|||||||||||||||||||||||||||| |
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| T |
8687632 |
gatcacaacaacaagaggatgtacctaa |
8687605 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4; HSP #4
Raw Score: 131; E-Value: 5e-68
Query Start/End: Original strand, 37 - 243
Target Start/End: Original strand, 8692886 - 8693092
Alignment:
| Q |
37 |
agtcctcttgcaacggtaccctctaccctactctatgtattcgttgccttaacaaattttccagttcaaccataaatggacctcaacacttagctcaagt |
136 |
Q |
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||||||||||||| ||||| ||||||||| | |||| ||||||||||| ||||| ||||||| |||| |||||||||||||||||||||||| || || |
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| T |
8692886 |
agtcctcttgcaatggtacactctaccctgatttatgcattcgttgcctaaacaagttttccaaatcaaacataaatggacctcaacacttagcacatgt |
8692985 |
T |
|
| Q |
137 |
tgccttatccgttagcctctcaagagcattgcaaacaagagggtaccttttgaatgcggcgaaggaactcaaagctattgatcacaacaacaagaggatg |
236 |
Q |
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|||||||||||| ||| |||| |||||||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |||||| |
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| T |
8692986 |
tgccttatccgtgagcttctctagagcattgcaaacaagagggtaccttttgaatgtggccaaggaactcaaagctattgatcacaacaacaaaaggatg |
8693085 |
T |
|
| Q |
237 |
tacctaa |
243 |
Q |
| |
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||||||| |
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| T |
8693086 |
tacctaa |
8693092 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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