View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_80 (Length: 257)
Name: NF19266_low_80
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_80 |
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Alignment Details
Target: chr8 (Bit Score: 187; Significance: 1e-101; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 180861 - 180643
Alignment:
| Q |
20 |
tgatgttatacgatgactggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccattggttgattgttgcggtgc |
119 |
Q |
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| T |
180861 |
tgatgttatatgatgactggctctagtgtcgaacacccagttaggagcagccgaatgtgaagtagaagcgaaatttgccattggttgattgttgcgttgc |
180762 |
T |
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| Q |
120 |
cgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgagttgaaacctcgacctctac |
219 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||| |
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| T |
180761 |
cgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaagtctatttccacatgagttgaaacctcgacctctac |
180662 |
T |
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| Q |
220 |
caagatagttagacccacg |
238 |
Q |
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| T |
180661 |
cacgatagttagacccacg |
180643 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 167; Significance: 2e-89; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 167; E-Value: 2e-89
Query Start/End: Original strand, 20 - 238
Target Start/End: Complemental strand, 1701288 - 1701070
Alignment:
| Q |
20 |
tgatgttatacgatgactggctccagtgtcaaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttaccattggttgattgttgcggtgc |
119 |
Q |
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|||||||||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||| || |
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| T |
1701288 |
tgatgttatatgatgactggctcctgtgtcgaacacccagttaggagcagccgaatgtgaagcagaagcgaaatttgccactggttgattgttgcgttgt |
1701189 |
T |
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| Q |
120 |
cgcagcggaggacattacttagcaatatggccaaggaaagagcagagttgacatcttggtggaggtctatttccacatgagttgaaacctcgacctctac |
219 |
Q |
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||||| ||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
1701188 |
agcagctgaggacaatacttagcaatatggccaagcaaagagcagagttgacatcttggtggaggtctatttccacgtgagttgaaacctcgacctctac |
1701089 |
T |
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| Q |
220 |
caagatagttagacccacg |
238 |
Q |
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| T |
1701088 |
cacgatagttagacccacg |
1701070 |
T |
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