View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_84 (Length: 254)
Name: NF19266_low_84
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_84 |
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Alignment Details
Target: chr5 (Bit Score: 214; Significance: 1e-117; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 214; E-Value: 1e-117
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 35064101 - 35064330
Alignment:
| Q |
10 |
aagaatatcaataaatcctagtataca-ccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgttgg |
108 |
Q |
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| T |
35064101 |
aagaaaatcaataaatcctagtatacaaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgttag |
35064200 |
T |
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| Q |
109 |
taaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtaccaacagatatgaaaggaccatccataggaat |
208 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
35064201 |
taaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtaccaacagatatgaaaggaccatccataggaat |
35064300 |
T |
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| Q |
209 |
tgaataataatcttttgcactcttaaattt |
238 |
Q |
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|||||||||||||||||||||||||||||| |
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| T |
35064301 |
tgaataataatcttttgcactcttaaattt |
35064330 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 10 - 238
Target Start/End: Original strand, 43025367 - 43025586
Alignment:
| Q |
10 |
aagaatatcaataaatcctagtatacaccgtaaggatgaaaacagttaaattaaaaacgatcgagattaagaaccgaccttcattggtctgagcgttggt |
109 |
Q |
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| T |
43025367 |
aagaaaatcaataaatcctagt----acagtaacgatgaaaacag-----ttaaaaacgatcaagattaagaaccgaccttcattggtctgagcgttggt |
43025457 |
T |
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| Q |
110 |
aaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtaccaacagatatgaaaggaccatccataggaatt |
209 |
Q |
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| T |
43025458 |
gaccagaaggtcaaaatcagtaccccttcccaaatgcttggatacaaatatactttgtttcaatgtaccaacagatataaaaggaccatccattggaatt |
43025557 |
T |
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| Q |
210 |
gaataataatcttttgcactcttaaattt |
238 |
Q |
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| T |
43025558 |
gaatggtaatcttttgcactcttaaattt |
43025586 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 142; E-Value: 1e-74
Query Start/End: Original strand, 77 - 238
Target Start/End: Original strand, 42815210 - 42815371
Alignment:
| Q |
77 |
taagaaccgaccttcattggtctgagcgttggtaaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgta |
176 |
Q |
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||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||| |
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| T |
42815210 |
taagaaccgaccttcattggtctgagcgttggtgaccagaaggtcaaaatcagtaccccttcctaaatgcttggatacaaatatactttgtttcaatgta |
42815309 |
T |
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| Q |
177 |
ccaacagatatgaaaggaccatccataggaattgaataataatcttttgcactcttaaattt |
238 |
Q |
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| T |
42815310 |
ccaacagatatgaaaggaccatccattggaattgaattataatcttttgcactcttaaattt |
42815371 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 60; Significance: 1e-25; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 60; E-Value: 1e-25
Query Start/End: Original strand, 79 - 238
Target Start/End: Complemental strand, 41562650 - 41562491
Alignment:
| Q |
79 |
agaaccgaccttcattggtctgagcgttggtaaccagaaggtcaaaatcagtaccccttccaaaacgcttggatacaaatatactttgtttcaatgtacc |
178 |
Q |
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|||||| |||||||||||| || || ||||| || | || |||||||||||||| || || ||| |||| ||| ||||||| ||| |||||| ||||| |
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| T |
41562650 |
agaaccaaccttcattggtttgggcattggtgacgacgagatcaaaatcagtacctctccctaaatgctttgattcaaatattttttctttcaaagtacc |
41562551 |
T |
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| Q |
179 |
aacagatatgaaaggaccatccataggaattgaataataatcttttgcactcttaaattt |
238 |
Q |
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|||||| ||||||||||||||||| | |||||||| ||||||| ||||||| |||||||| |
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| T |
41562550 |
aacagagatgaaaggaccatccatggaaattgaatcataatctcttgcacttttaaattt |
41562491 |
T |
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