View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_86 (Length: 253)
Name: NF19266_low_86
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_86 |
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Alignment Details
Target: chr8 (Bit Score: 122; Significance: 1e-62; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 122; E-Value: 1e-62
Query Start/End: Original strand, 11 - 235
Target Start/End: Complemental strand, 7802678 - 7802453
Alignment:
| Q |
11 |
cacagatggcaaggttattagaaatttaaaaaagccctta----ttaagcaccaaaccatggttgaggatgagaatctttcnnnnnnncaatggttgagg |
106 |
Q |
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| T |
7802678 |
cacagatggcaaggttattagaaatttaaaaaagtccttacttattaagcaccaaaccatggttgaggatgagaatctttcaaaaaa-caatggttgagg |
7802580 |
T |
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| Q |
107 |
atgagaatggcttcgatggaggagagagtgannnnnnnaacgatataaaaccaaaaagaggctctgatcaaatnnnnnnnnnnccaacaagaggcaaccg |
206 |
Q |
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| T |
7802579 |
atgagaatggcttcgatggaggagagagtgatttttttaacgatataaaaccaaaaagaggctctgaccaaat--aaaaaaaaccaacaagaggcaaccg |
7802482 |
T |
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| Q |
207 |
gatatacatagtcaaatatagaggttcat |
235 |
Q |
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| T |
7802481 |
gatatacatagtcaaatatagaggttcat |
7802453 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 114; E-Value: 6e-58
Query Start/End: Original strand, 11 - 233
Target Start/End: Complemental strand, 7820385 - 7820162
Alignment:
| Q |
11 |
cacagatggcaaggttattagaaatttaaaaaagcccttattaagcaccaaaccatggttgaggatgagaatctttcnnnnnnncaatggttgaggatga |
110 |
Q |
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|||| ||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |
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| T |
7820385 |
cacatatggcaaggttattagaaatttaaaaaagcctttattaagcaccaaaccatggttgaggatgagaatctttcaaaaaat-aatggttgaggatga |
7820287 |
T |
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| Q |
111 |
gaatggcttcgatggaggagagagtgannnnnnnaacgatataaaaccaaaaagaggctctgatcaaat--nnnnnnnnnnccaacaagaggcaaccgga |
208 |
Q |
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| T |
7820286 |
gaatggcttcgatggaggagagagtgatttttttaacgatataaaaccaaaaagaggctctgaccaaataaaaaaaaaaaaccaacaagaggcaaccgaa |
7820187 |
T |
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| Q |
209 |
tatacatagtcaaatatagaggttc |
233 |
Q |
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||| ||||||||||||||||||||| |
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| T |
7820186 |
tatgcatagtcaaatatagaggttc |
7820162 |
T |
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