View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_88 (Length: 250)
Name: NF19266_low_88
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_88 |
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Alignment Details
Target: chr3 (Bit Score: 147; Significance: 1e-77; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 147; E-Value: 1e-77
Query Start/End: Original strand, 1 - 225
Target Start/End: Complemental strand, 45161634 - 45161421
Alignment:
| Q |
1 |
aaatatgggccgatcgacaatcaagcacaataggctttttaaaaaagcttaagcccaacctatttaaacatatatgttatttttaatagcttaaatttgg |
100 |
Q |
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| T |
45161634 |
aaatatgggccgatcaacagtcaagcacaataggccttttaaaaatgcttaagcccaacctatttaaacatatatgttatttttaatagcttaaatttgg |
45161535 |
T |
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| Q |
101 |
tcttactattaaacaagtcgaaccaaattaaacttaaataagttagatcaaagatctttatcgagtgaaagacttttcactcaatagtagatctctatca |
200 |
Q |
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| T |
45161534 |
tcttactattaaacaagtcgaacaaaactaaacttaaataagttagatcatggatctttatctggtgaaagac-----------tagtagatctctatca |
45161446 |
T |
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| Q |
201 |
agtggtttggaatactttaaaaata |
225 |
Q |
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||||||||||||||||||||||||| |
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| T |
45161445 |
agtggtttggaatactttaaaaata |
45161421 |
T |
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