View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19266_low_9 (Length: 544)
Name: NF19266_low_9
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_9 |
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Alignment Details
Target: chr8 (Bit Score: 501; Significance: 0; HSPs: 7)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 501; E-Value: 0
Query Start/End: Original strand, 18 - 534
Target Start/End: Original strand, 38864581 - 38865097
Alignment:
| Q |
18 |
gctatttcatgatcttctcgcacgcatggtccaagcagagttgaacctagtacgtaagggataagtacgtaccatgattcaaatgttgttttgactatgg |
117 |
Q |
| |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||| |
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| T |
38864581 |
gctatttcatgatcttctcgcacgcatggtccaagcagagttgaacctagtacgtaagggataagtacgtaccatgattcaaatgttgttttcactatgg |
38864680 |
T |
|
| Q |
118 |
ttgatcaaatttgatatgaactttcttgctcaaacacaactcaagacattaagagagggtatttaattagtttatatttctctatagttacgttccaaag |
217 |
Q |
| |
|
||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864681 |
ttgatcaaatttgatatgaactttcttgctcaaccacaactcaagacattaagagagggtatttaattagtttatatttctctatagttacgttccaaag |
38864780 |
T |
|
| Q |
218 |
cttcatgctcaagtggttggatccttataacggtttctagtactggcacaacaattggttgttgtgaccgaacaatctttctacaagtttcaagaagaca |
317 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
38864781 |
cttcatgctcaagtggttggatccttataacggtttctagtactggcataacaattggttgttgtgaccgaacaatctttctacaagtttcaagaagaca |
38864880 |
T |
|
| Q |
318 |
ttgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttca |
417 |
Q |
| |
|
||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864881 |
ttgtctacactttggacatgatgggtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggttgcatttaggcaaaatgcgcaccttttca |
38864980 |
T |
|
| Q |
418 |
ccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctt |
517 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
38864981 |
ccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatagctcactgtggggaatgttttgagagctt |
38865080 |
T |
|
| Q |
518 |
tcttcttgattcctttg |
534 |
Q |
| |
|
||||||||||||||||| |
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|
| T |
38865081 |
tcttcttgattcctttg |
38865097 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 202; E-Value: 1e-110
Query Start/End: Original strand, 189 - 533
Target Start/End: Original strand, 38840682 - 38841029
Alignment:
| Q |
189 |
ttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatccttataacggtttctagtactggcacaacaattggttgt---tgtgac |
285 |
Q |
| |
|
||||||||| ||||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||| | ||||||| ||||||||||| || ||| |
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|
| T |
38840682 |
ttatatttccctatagttacgttccaaagcttcgtgctctagtggttcgatccttataataatttctggcactggcaacacaattggttgcacctgcgac |
38840781 |
T |
|
| Q |
286 |
cgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccat |
385 |
Q |
| |
|
| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
38840782 |
ccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccat |
38840881 |
T |
|
| Q |
386 |
ggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctga |
485 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |||||||| |||| ||| |
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|
| T |
38840882 |
ggttgcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttga |
38840981 |
T |
|
| Q |
486 |
atagctcactgtggggaatgttttgagagctttcttcttgattccttt |
533 |
Q |
| |
|
|||||||||||||| |||| || ||||||||||||||||||||||| |
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|
| T |
38840982 |
gtagctcactgtgggaaatgccttaagagctttcttcttgattccttt |
38841029 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #3
Raw Score: 196; E-Value: 1e-106
Query Start/End: Original strand, 192 - 534
Target Start/End: Original strand, 38861297 - 38861642
Alignment:
| Q |
192 |
tatttctctatagttacgttccaaagcttcatgctcaagtggttggatccttataacggtttctagtactggcacaacaattggttg---ttgtgaccga |
288 |
Q |
| |
|
|||||||||||||||||||||||||||||| ||||| ||||||| |||||||||| |||||| | ||||||| | ||||||||| ||| |||| | |
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|
| T |
38861297 |
tatttctctatagttacgttccaaagcttcgtgctctagtggttctatccttataatagtttctggcactggcaacaaaattggttgcacttgcgaccca |
38861396 |
T |
|
| Q |
289 |
acaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggt |
388 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
38861397 |
ccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggt |
38861496 |
T |
|
| Q |
389 |
tgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaata |
488 |
Q |
| |
|
||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | ||||| |
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|
| T |
38861497 |
tgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtggaata |
38861596 |
T |
|
| Q |
489 |
gctcactgtggggaatgttttgagagctttcttcttgattcctttg |
534 |
Q |
| |
|
||||| ||| || ||| | ||||||||||||||||||||||||||| |
|
|
| T |
38861597 |
gctcattgtaggaaatttcttgagagctttcttcttgattcctttg |
38861642 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #4
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 189 - 534
Target Start/End: Complemental strand, 38851222 - 38850874
Alignment:
| Q |
189 |
ttatatttctctatagttacgttccaaagcttcatgctcaagtggttggatccttataacggtttctagtactggcacaacaattggttg---ttgtgac |
285 |
Q |
| |
|
||||||||| ||||||||||| |||||||||| | | || ||||||||||| |||||| |||||| | ||||||| ||||||||||| ||| ||| |
|
|
| T |
38851222 |
ttatatttccctatagttacgctccaaagcttgaggttctagtggttggatagttataatagtttctggcactggcaacacaattggttgcacttgcgac |
38851123 |
T |
|
| Q |
286 |
cgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccat |
385 |
Q |
| |
|
| | ||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||| |
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|
| T |
38851122 |
ccaccaatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccat |
38851023 |
T |
|
| Q |
386 |
ggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctga |
485 |
Q |
| |
|
|||||||||||||||||||||||| |||||||||||||| ||||||||||||||||| ||||| ||||||||||||||||| || |||||||| | || |
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|
| T |
38851022 |
ggttgcatttaggcaaaatgcgcaatttttcaccctttgtgaactctgagagacatatcatacaatctgtatccaaacttggtagattcaactcggtgga |
38850923 |
T |
|
| Q |
486 |
atagctcactgtggggaatgttttgagagctttcttcttgattcctttg |
534 |
Q |
| |
|
|||||||| ||| || ||| | ||||||||||||||||||||||||||| |
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|
| T |
38850922 |
atagctcattgtaggaaatttcttgagagctttcttcttgattcctttg |
38850874 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #5
Raw Score: 172; E-Value: 4e-92
Query Start/End: Original strand, 290 - 533
Target Start/End: Original strand, 38858524 - 38858767
Alignment:
| Q |
290 |
caatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatggtt |
389 |
Q |
| |
|
||||||||| |||||||||||||||||||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||| |||||||||||||| |
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|
| T |
38858524 |
caatctttcgacaagtttcaagaagacattgtctgcactttggacatgatgaatgttcttttagccatttgtcaatgcaacgaacatgaaatccatggtt |
38858623 |
T |
|
| Q |
390 |
gcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaatag |
489 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||| |||| ||||||||||| |||||||| |||| ||| ||| |
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|
| T |
38858624 |
gcatttaggcaaaatgcgcaccttttcaccctttgtgaactctgagagacatatcatacattctgcgtccaaacttggtagtttcaagtcagttgagtag |
38858723 |
T |
|
| Q |
490 |
ctcactgtggggaatgttttgagagctttcttcttgattccttt |
533 |
Q |
| |
|
||||||||||| |||| || ||||||||||||||||||||||| |
|
|
| T |
38858724 |
ctcactgtgggaaatgccttaagagctttcttcttgattccttt |
38858767 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #6
Raw Score: 135; E-Value: 4e-70
Query Start/End: Original strand, 288 - 534
Target Start/End: Original strand, 38846604 - 38846850
Alignment:
| Q |
288 |
aacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
387 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
38846604 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatga |
38846703 |
T |
|
| Q |
388 |
ttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaat |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | |||||||||||||||| |||| ||||||||||||| ||||| |
|
|
| T |
38846704 |
ttgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagtttcaactcagttgaat |
38846803 |
T |
|
| Q |
488 |
agctcactgtggggaatgttttgagagctttcttcttgattcctttg |
534 |
Q |
| |
|
| || ||||| |||||||| ||||||||||||||||||||||||||| |
|
|
| T |
38846804 |
aacttactgttgggaatgtcttgagagctttcttcttgattcctttg |
38846850 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #7
Raw Score: 127; E-Value: 3e-65
Query Start/End: Original strand, 288 - 534
Target Start/End: Original strand, 38826996 - 38827242
Alignment:
| Q |
288 |
aacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtgaaatccatgg |
387 |
Q |
| |
|
||||||||||| |||||| ||||| || || ||||| ||||| || |||||||||||| |||||||||||||| ||||||||||| || || ||||| |
|
|
| T |
38826996 |
aacaatctttcgacaagtctcaaggaggcactgtctgcacttagggcatgatgagtgtgattttagccatttgtcgatgcaacgaacatggaaaccatga |
38827095 |
T |
|
| Q |
388 |
ttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaactcagctgaat |
487 |
Q |
| |
|
|||||||||||||||||||||||||||||||| ||||| || |||||||||||||| | |||||||||||||||| |||| ||||| ||||||| ||||| |
|
|
| T |
38827096 |
ttgcatttaggcaaaatgcgcaccttttcaccttttgtgaattctgagagacatatcacacactctgtatccaaagttggtagttttaactcagttgaat |
38827195 |
T |
|
| Q |
488 |
agctcactgtggggaatgttttgagagctttcttcttgattcctttg |
534 |
Q |
| |
|
| || ||||| || ||||| ||||||||||||||||||||||||||| |
|
|
| T |
38827196 |
aacttactgttggaaatgtcttgagagctttcttcttgattcctttg |
38827242 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 68; Significance: 4e-30; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 68; E-Value: 4e-30
Query Start/End: Original strand, 279 - 530
Target Start/End: Original strand, 43665988 - 43666239
Alignment:
| Q |
279 |
ttgtgaccgaacaatctttctacaagtttcaagaagacattgtctacactttggacatgatgagtgttcctttagccatttgtcaatgcaacgaacgtga |
378 |
Q |
| |
|
|||||||| |||||| || |||||||||||| ||| || |||||||| || ||||| || || || ||||||||||||||||||||||||| ||| |
|
|
| T |
43665988 |
ttgtgacccaacaattttgttacaagtttcaataaggcactgtctacatttcggacaagacgaatgcgaacttagccatttgtcaatgcaacgaacatga |
43666087 |
T |
|
| Q |
379 |
aatccatggttgcatttaggcaaaatgcgcaccttttcaccctttgtaaactctgagagacatataatacactctgtatccaaacttggaagtttcaact |
478 |
Q |
| |
|
||||||||||| || || ||||||| |||||| || || || || || ||||| || |||||||| | |||||| | |||||||| || | ||||| || |
|
|
| T |
43666088 |
aatccatggttacactttggcaaaaggcgcactttatcgccgttagtgaactccgacagacatatcacacactccgagtccaaactcggcaatttcagct |
43666187 |
T |
|
| Q |
479 |
cagctgaatagctcactgtggggaatgttttgagagctttcttcttgattcc |
530 |
Q |
| |
|
|| |||| || || ||||||| |||| | ||||||||||||||||||||||| |
|
|
| T |
43666188 |
catctgagtaactaactgtggtgaatttcttgagagctttcttcttgattcc |
43666239 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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