View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19266_low_93 (Length: 250)
Name: NF19266_low_93
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_93 |
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Alignment Details
Target: chr5 (Bit Score: 223; Significance: 1e-123; HSPs: 3)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 223; E-Value: 1e-123
Query Start/End: Original strand, 1 - 235
Target Start/End: Original strand, 33547024 - 33547258
Alignment:
| Q |
1 |
cctcacgactactaccaccacctgtccctatggagtaagttctttatatcatttaactattttagttgtatctaagcttggactgagaatcactcaatta |
100 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| |
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| T |
33547024 |
cctcacgactactaccaccacctgtccctatggagtaagttctttatatcatttaactattttagttgtatttaagcttggactgagaatcactcaatta |
33547123 |
T |
|
| Q |
101 |
tttcaacaattatcttctctctaaaaccctaaaacttactcttaaatattcataacaatcgttgctagaatccagttttacccttgtttgattatgattg |
200 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||| |
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| T |
33547124 |
tttcaacaattatcttctctctaaaaccctaaaacttactcttaaatattcataacaatcgttgctagaatccatttttacccttgtttgattatgattg |
33547223 |
T |
|
| Q |
201 |
agcttattttttgtttggtacagagacctcccacc |
235 |
Q |
| |
|
|||||| |||||||||||||||||||||||||||| |
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|
| T |
33547224 |
agcttaatttttgtttggtacagagacctcccacc |
33547258 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 187; E-Value: 1e-101
Query Start/End: Original strand, 25 - 235
Target Start/End: Original strand, 33548050 - 33548260
Alignment:
| Q |
25 |
tccctatggagtaagttctttatatcatttaactattttagttgtatctaagcttggactgagaatcactcaattatttcaacaattatcttctctctaa |
124 |
Q |
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||||||||||||||||||||| ||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||||||||||||| |
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| T |
33548050 |
tccctatggagtaagttctttctatcatttaactattttagttgtatttaagcttggactgagaatcactcaattagttcaacaattatcttctctctaa |
33548149 |
T |
|
| Q |
125 |
aaccctaaaacttactcttaaatattcataacaatcgttgctagaatccagttttacccttgtttgattatgattgagcttattttttgtttggtacaga |
224 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||||||||| |
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| T |
33548150 |
aaccctaaaacttactcttaaatattcacaacaatcgttgctagaatccatttttacccttgtttgattatgattgagcttaatttttgtttggtacaga |
33548249 |
T |
|
| Q |
225 |
gacctcccacc |
235 |
Q |
| |
|
||||||||||| |
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|
| T |
33548250 |
gacctcccacc |
33548260 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #3
Raw Score: 179; E-Value: 1e-96
Query Start/End: Original strand, 25 - 235
Target Start/End: Complemental strand, 33355344 - 33355134
Alignment:
| Q |
25 |
tccctatggagtaagttctttatatcatttaactattttagttgtatctaagcttggactgagaatcactcaattatttcaacaattatcttctctctaa |
124 |
Q |
| |
|
||||||||||||||||| | ||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
33355344 |
tccctatggagtaagttatctatatcatttaactattttagttgtatttaagcttggactgagaatcactcaattatttcaacaattatcttctctctaa |
33355245 |
T |
|
| Q |
125 |
aaccctaaaacttactcttaaatattcataacaatcgttgctagaatccagttttacccttgtttgattatgattgagcttattttttgtttggtacaga |
224 |
Q |
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|
||||||||||||||||||||||||||||||||||||||| |||||||||| |||||||||||||||| |||||||||||||| |||||||||||||||| |
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| T |
33355244 |
aaccctaaaacttactcttaaatattcataacaatcgtttctagaatccatttttacccttgtttgagtatgattgagcttaatttttgtttggtacagg |
33355145 |
T |
|
| Q |
225 |
gacctcccacc |
235 |
Q |
| |
|
||||||||||| |
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|
| T |
33355144 |
gacctcccacc |
33355134 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1 (Bit Score: 43; Significance: 0.000000000000001; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 43; E-Value: 0.000000000000001
Query Start/End: Original strand, 84 - 159
Target Start/End: Complemental strand, 31297654 - 31297577
Alignment:
| Q |
84 |
tgagaatcactcaattatttcaacaattatcttctctctaaaaccctaaaa--cttactcttaaatattcataacaat |
159 |
Q |
| |
|
||||||||| |||| ||||||||||||||||||||||||||||||||||| ||| |||| |||||||||| ||||| |
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| T |
31297654 |
tgagaatcaatcaaacatttcaacaattatcttctctctaaaaccctaaaactcttgctctcaaatattcatgacaat |
31297577 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 39; Significance: 0.0000000000004; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 39; E-Value: 0.0000000000004
Query Start/End: Original strand, 100 - 159
Target Start/End: Complemental strand, 28105143 - 28105082
Alignment:
| Q |
100 |
atttcaacaattatcttctctctaaaaccctaaaa--cttactcttaaatattcataacaat |
159 |
Q |
| |
|
||||||| ||||||||||||||||||||||||||| |||||||| |||| ||||||||||| |
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|
| T |
28105143 |
atttcaataattatcttctctctaaaaccctaaaactcttactctcaaatgttcataacaat |
28105082 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 31; E-Value: 0.00000002
Query Start/End: Original strand, 108 - 159
Target Start/End: Original strand, 27967608 - 27967661
Alignment:
| Q |
108 |
aattatcttctctctaaaaccctaaaa--cttactcttaaatattcataacaat |
159 |
Q |
| |
|
|||||||||||||||||||||| |||| |||||||| |||| ||||||||||| |
|
|
| T |
27967608 |
aattatcttctctctaaaacccaaaaactcttactctcaaatgttcataacaat |
27967661 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 35; Significance: 0.00000000009; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 35; E-Value: 0.00000000009
Query Start/End: Original strand, 102 - 136
Target Start/End: Complemental strand, 26371126 - 26371092
Alignment:
| Q |
102 |
ttcaacaattatcttctctctaaaaccctaaaact |
136 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |
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|
| T |
26371126 |
ttcaacaattatcttctctctaaaaccctaaaact |
26371092 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 32; Significance: 0.000000005; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 32; E-Value: 0.000000005
Query Start/End: Original strand, 84 - 127
Target Start/End: Complemental strand, 55287187 - 55287145
Alignment:
| Q |
84 |
tgagaatcactcaattatttcaacaattatcttctctctaaaac |
127 |
Q |
| |
|
||||||||| ||||| |||||||||||||||||||||||||||| |
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|
| T |
55287187 |
tgagaatcaatcaat-atttcaacaattatcttctctctaaaac |
55287145 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 30; Significance: 0.00000008; HSPs: 2)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 22803143 - 22803194
Alignment:
| Q |
88 |
aatcactcaattatttcaacaattatctt---ctctctaaaaccctaaaact |
136 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22803143 |
aatcaatcaaatatttcaacaattatcttcttctctctaaaaccctaaaact |
22803194 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 30; E-Value: 0.00000008
Query Start/End: Original strand, 88 - 136
Target Start/End: Original strand, 22869638 - 22869689
Alignment:
| Q |
88 |
aatcactcaattatttcaacaattatctt---ctctctaaaaccctaaaact |
136 |
Q |
| |
|
||||| |||| |||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
22869638 |
aatcaatcaaatatttcaacaattatcttcttctctctaaaaccctaaaact |
22869689 |
T |
|
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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