View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19266_low_94 (Length: 247)

Name: NF19266_low_94
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19266_low_94
NF19266_low_94
[»] chr7 (1 HSPs)
chr7 (24-247)||(18069073-18069296)
[»] chr4 (1 HSPs)
chr4 (22-247)||(24900762-24900987)
[»] chr1 (1 HSPs)
chr1 (27-247)||(52266995-52267215)
[»] scaffold0325 (1 HSPs)
scaffold0325 (24-247)||(10250-10473)


Alignment Details
Target: chr7 (Bit Score: 184; Significance: 1e-99; HSPs: 1)
Name: chr7
Description:

Target: chr7; HSP #1
Raw Score: 184; E-Value: 1e-99
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 18069073 - 18069296
Alignment:
Q  24 gggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaaatcaactatattaaattctaaaatcattttgttc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||    
T  18069073 gggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgtatttgacaagtcaactatattaaattctaaaatcattttgttc 18069172  T
Q  124 cctttaacaaagggcttactgttaacagccaaagatctaaaattgtctgatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaactc 223  Q
    |||||||| |||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||    
T  18069173 cctttaacgaagggcttactgttaactaccaaagctctaaaattgtctaatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaactc 18069272  T
Q  224 ctgttattcctcctatgctactcc 247  Q
    || |||||||||| |||| |||||    
T  18069273 cttttattcctcccatgcgactcc 18069296  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 182; Significance: 2e-98; HSPs: 1)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 182; E-Value: 2e-98
Query Start/End: Original strand, 22 - 247
Target Start/End: Complemental strand, 24900987 - 24900762
Alignment:
Q  22 aagggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaaatcaactatattaaattctaaaatcattttgt 121  Q
    ||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||    
T  24900987 aagggaaatgattaaaagcacgacacattttttcgtgcatatcccacaattgattttgcatttgacaagtcaactatattaaattctaaaatcattttgt 24900888  T
Q  122 tccctttaacaaagggcttactgttaacagccaaagatctaaaattgtctgatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaac 221  Q
    ||||||| || |||||||||||||||||  |||||| ||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||    
T  24900887 tcccttttacgaagggcttactgttaactaccaaagctctaaaattgtctaatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaac 24900788  T
Q  222 tcctgttattcctcctatgctactcc 247  Q
    |||| |||||||||| |||| |||||    
T  24900787 tccttttattcctcccatgcgactcc 24900762  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr1 (Bit Score: 177; Significance: 2e-95; HSPs: 1)
Name: chr1
Description:

Target: chr1; HSP #1
Raw Score: 177; E-Value: 2e-95
Query Start/End: Original strand, 27 - 247
Target Start/End: Complemental strand, 52267215 - 52266995
Alignment:
Q  27 aaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaaatcaactatattaaattctaaaatcattttgttccct 126  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |||    
T  52267215 aaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttattacct 52267116  T
Q  127 ttaacaaagggcttactgttaacagccaaagatctaaaattgtctgatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaactcctg 226  Q
    |||||||||||||||||||||||  |||||| ||||||||||| |||||||||||||||||| ||||||||||||||||||||||||||||||||||||     
T  52267115 ttaacaaagggcttactgttaactaccaaagctctaaaattgtttgatggtggaaaacaaagatctgttctcaacgaaaaacacaaccatcaaactcctt 52267016  T
Q  227 ttattcctcctatgctactcc 247  Q
    |||||||||| |||| |||||    
T  52267015 ttattcctcccatgcgactcc 52266995  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0325 (Bit Score: 176; Significance: 6e-95; HSPs: 1)
Name: scaffold0325
Description:

Target: scaffold0325; HSP #1
Raw Score: 176; E-Value: 6e-95
Query Start/End: Original strand, 24 - 247
Target Start/End: Original strand, 10250 - 10473
Alignment:
Q  24 gggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaaatcaactatattaaattctaaaatcattttgttc 123  Q
    |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||    
T  10250 gggaaatgattaaaagcacgacacattttttcgtgcatatcccacgattgattttgcatttgacaagtcaactatattaaattctaaaatcattttgttc 10349  T
Q  124 cctttaacaaagggcttactgttaacagccaaagatctaaaattgtctgatggtggaaaacaaagctctgttctcaacgaaaaacacaaccatcaaactc 223  Q
    ||||||||||||||||||||||||||  |||||| ||||||||||| ||||||| |||||||||||||||||||||||||||||||||| ||||||||||    
T  10350 cctttaacaaagggcttactgttaactaccaaagctctaaaattgtttgatggtagaaaacaaagctctgttctcaacgaaaaacacaatcatcaaactc 10449  T
Q  224 ctgttattcctcctatgctactcc 247  Q
    |  || ||||||| |||| |||||    
T  10450 cctttcttcctcccatgcgactcc 10473  T

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