View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19266_low_98 (Length: 243)
Name: NF19266_low_98
Description: NF19266
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19266_low_98 |
 | |
|
| [»] chr2 (2 HSPs) |
| |
|
Alignment Details
Target: chr2 (Bit Score: 227; Significance: 1e-125; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 227; E-Value: 1e-125
Query Start/End: Original strand, 1 - 243
Target Start/End: Original strand, 613989 - 614231
Alignment:
| Q |
1 |
aaattattatgcgatgaagacgtggtttgacatgaatgatttccgtggggtgactgtgcaagttcagaagtatgaagactttacttggttaaatgcttct |
100 |
Q |
| |
|
||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
613989 |
aaattatgctgcgatgaagacgtggtttgccatgaatgatttccgtggggtgactgtgcaagttcagaagtatgaagactttacttggttaaatgcttct |
614088 |
T |
|
| Q |
101 |
tatgttcccgtgcttaagcaacttcaagattcagaaatgcaaagatactacttttctggaaacaccgacgatggaaagacacctatcaagtttcgtaacc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||| |
|
|
| T |
614089 |
tatgttcccgtgcttaagcaacttcaagattcagaaatgcaaagatactacttttctggaaacaccgacgatggaaggacacctatcaagtttcgtaacc |
614188 |
T |
|
| Q |
201 |
ctaaatatctgtccatgcttaaccatcttaggttctatatccc |
243 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
614189 |
ctaaatatctgtccatgcttaaccatcttaggttctatatccc |
614231 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 148; E-Value: 3e-78
Query Start/End: Original strand, 12 - 243
Target Start/End: Original strand, 4619920 - 4620151
Alignment:
| Q |
12 |
cgatgaagacgtggtttgacatgaatgatttccgtggggtgactgtgcaagttcagaagtatgaagactttacttggttaaatgcttcttatgttcccgt |
111 |
Q |
| |
|
|||||||| ||||||||| ||||||||| || ||||||||||||||| |||||||||||||||||||||| | |||||||||||||| |||||||| || |
|
|
| T |
4619920 |
cgatgaaggcgtggtttgccatgaatgactttcgtggggtgactgtggaagttcagaagtatgaagacttctcatggttaaatgcttcatatgttcctgt |
4620019 |
T |
|
| Q |
112 |
gcttaagcaacttcaagattcagaaatgcaaagatactacttttctggaaacaccgacgatggaaagacacctatcaagtttcgtaaccctaaatatctg |
211 |
Q |
| |
|
|||||||||||||||||| |||||||| ||||| ||||||||||| ||||||| || | |||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
4620020 |
gcttaagcaacttcaagactcagaaatacaaagctactacttttccggaaacagtgatggtggaaagacacctatcaagtttcgtaaccctaaatatctg |
4620119 |
T |
|
| Q |
212 |
tccatgcttaaccatcttaggttctatatccc |
243 |
Q |
| |
|
|||||||||||||| | |||||||||||||| |
|
|
| T |
4620120 |
tccatgcttaaccacttgaggttctatatccc |
4620151 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University