View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_13 (Length: 476)
Name: NF19267_high_13
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_13 |
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Alignment Details
Target: chr8 (Bit Score: 287; Significance: 1e-161; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 287; E-Value: 1e-161
Query Start/End: Original strand, 7 - 297
Target Start/End: Original strand, 37750932 - 37751222
Alignment:
| Q |
7 |
tccaagaatatacgaaaatcgatgttcaaaatttgcgcggtttcagtcttcgtttctcgcattgacactctctaaatctaaatctctctcccattcgata |
106 |
Q |
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|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37750932 |
tccacgaatatacgaaaatcgatgttcaaaatttgcgcggtttcagtcttcgtttctcgcattgacactctctaaatctaaatctctctcccattcgata |
37751031 |
T |
|
| Q |
107 |
ggaagaggaataagcaatggagtggaatctgctcaaggatttcgagcttgaaccaaagaatcgttctgttgaagctctcaggaggtggagatccgccgtc |
206 |
Q |
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|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37751032 |
ggaagaggaataagcaatggagtggaatctgctcaaggatttcgagcttgaaccaaagaatcgttctgttgaagctctcaggaggtggagatccgccgtc |
37751131 |
T |
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| Q |
207 |
actctcgtcaaaaaccgccgcagacggtttcgtatggttgccgatcttgaaaaacgctctgaagctgaacagattaagcagggaatcaagg |
297 |
Q |
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||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37751132 |
actctcgtcaaaaaccgccgcagacggtttcgtatggttgccgatcttgaaaaacgctctgaagctgaacagattaagcagggaatcaagg |
37751222 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 347 - 462
Target Start/End: Original strand, 37751272 - 37751387
Alignment:
| Q |
347 |
atcgctagtcttaaacgctacaggaatttggaaaacaagctcagattgaaacttctaaacaaacacatacaaaattagctagaaaaaggtactcataatt |
446 |
Q |
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|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
37751272 |
atcgctagtcttaaacgctacaggaattaggaaaacaagctcagattgaaacttctaaacaaacacatacaaaattagctagaaaaaggtactcataatt |
37751371 |
T |
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| Q |
447 |
tgtcataatattattg |
462 |
Q |
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|||||||||||||||| |
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| T |
37751372 |
tgtcataatattattg |
37751387 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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