View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_16 (Length: 447)
Name: NF19267_high_16
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_16 |
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Alignment Details
Target: chr1 (Bit Score: 365; Significance: 0; HSPs: 1)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 365; E-Value: 0
Query Start/End: Original strand, 17 - 438
Target Start/End: Complemental strand, 15469709 - 15469288
Alignment:
| Q |
17 |
agtgaaatcgttacatacatctaaaatcaaaattatagtagtactctataccttccaggcttccacaatattaaatgtagccgacaatatgcacaatttt |
116 |
Q |
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|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| |
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| T |
15469709 |
agtgaaatagttacatacatctaaaatcaaaattatagtagtactctataccttccaggcttccacaattttaaatgtagccgacaatatgcacaatttt |
15469610 |
T |
|
| Q |
117 |
taacaattatagtaaccaattttaaatttagctacatttataggatgcaattatagtttcttgcagctctattcaatttttatcataaaaaaggaactct |
216 |
Q |
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||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15469609 |
taacaattatagtaaccaattttaaatttagctacatttatagaatgcaattatagtttcttgcagctctattcaatttttatcataaaaaaggaactct |
15469510 |
T |
|
| Q |
217 |
ttaagtggtcactgtccttgcctnnnnnnnctgctcactgtcccagttttaaaatgttgaatcaatcacaatgattgaagttagtggaattttcttaaaa |
316 |
Q |
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|||| |||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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| T |
15469509 |
ttaactggtcactgtccttgcctaaaaaaactgctcactgtcccagttttaaaatgttgaatcaatcacaatgattgaagttagtggaattttcttaaaa |
15469410 |
T |
|
| Q |
317 |
gaagaggaactggactattagttaaattctttggttcttgttcaaataaaaaggttaaattctttagatgaaattcattgtagtatttcccttctttcat |
416 |
Q |
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|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||||| |
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| T |
15469409 |
gaagaggaactggactattagttaaattcttttgttcttgttcaaataaaaaggttaaattctttagatgaaattcattctggtatttcccttctttcat |
15469310 |
T |
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| Q |
417 |
ctgtacaatagtagagtattat |
438 |
Q |
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|| | ||||||||||||||||| |
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| T |
15469309 |
ctttccaatagtagagtattat |
15469288 |
T |
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