View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_18 (Length: 437)
Name: NF19267_high_18
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_18 |
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Alignment Details
Target: chr3 (Bit Score: 316; Significance: 1e-178; HSPs: 2)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 316; E-Value: 1e-178
Query Start/End: Original strand, 13 - 328
Target Start/End: Original strand, 32052988 - 32053303
Alignment:
| Q |
13 |
aatatcaacaacaacattcgcagtattcggcaactcaaccggtccaggctcaagactaatcttactagattcaaaaaccccgagactctgaagcctagca |
112 |
Q |
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| T |
32052988 |
aatatcaacaacaacattcgcagtattcggcaactcaaccggtccaggctcaagactaatcttactagattcaaaaaccccgagactctgaagcctagca |
32053087 |
T |
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| Q |
113 |
agcacaatctccgatgcacgaataagctcctgcatggtggtaacatcttcgattcccttgagttcagcttcgatcacccaatctttggttttcgtgttgc |
212 |
Q |
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| T |
32053088 |
agcacaatctccgatgcacgaataagctcctgcatggtggtaacatcttcgattcccttgagttcagcttcgatcacccaatctttggttttcgtgttgc |
32053187 |
T |
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| Q |
213 |
cgcgaattatcacgtcgtggactcggattggaactagctccgatgagaggcgtcgggatagggtttcgagtttgaatttttggtcgcggagacgggagag |
312 |
Q |
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| T |
32053188 |
cgcgaattatcacgtcgtggactcggattggaactagctccgatgagaggcgtcgggatagggtttcgagtttgaatttttggtcgcggagacgggagag |
32053287 |
T |
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| Q |
313 |
tggggattgtggaaca |
328 |
Q |
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| T |
32053288 |
tggggattgtggaaca |
32053303 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3; HSP #2
Raw Score: 34; E-Value: 0.0000000006
Query Start/End: Original strand, 387 - 420
Target Start/End: Original strand, 32053365 - 32053398
Alignment:
| Q |
387 |
tgggtttgggattgttagggtttggtgaattttc |
420 |
Q |
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| T |
32053365 |
tgggtttgggattgttagggtttggtgaattttc |
32053398 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 31; Significance: 0.00000004; HSPs: 1)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 31; E-Value: 0.00000004
Query Start/End: Original strand, 161 - 247
Target Start/End: Original strand, 35835148 - 35835234
Alignment:
| Q |
161 |
tcgattcccttgagttcagcttcgatcacccaatctttggttttcgtgttgccgcgaattatcacgtcgtggactcggattggaact |
247 |
Q |
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| T |
35835148 |
tcgattccatcgagttcagcttcgattatccaatctttggttttggtgtttccggttatgaaaacatcgtggactcgaattggaact |
35835234 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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