View Alignment

This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.

Legend
 Query
 Query hiting target  Query hiting target's complemental strand
 Query's complemental strand hiting target  Query's complemental strand hiting target's complemental strand

Alignment Overview

Query: NF19267_high_19 (Length: 435)

Name: NF19267_high_19
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)


[»] NF19267_high_19
NF19267_high_19
[»] chr6 (27 HSPs)
chr6 (18-425)||(27588777-27589184)
chr6 (158-336)||(26807069-26807242)
chr6 (182-361)||(26639757-26639936)
chr6 (182-361)||(26745723-26745902)
chr6 (46-320)||(26963616-26963890)
chr6 (152-314)||(26650485-26650641)
chr6 (152-314)||(26756453-26756609)
chr6 (255-365)||(25079082-25079192)
chr6 (75-227)||(27660701-27660847)
chr6 (182-361)||(26629017-26629195)
chr6 (182-361)||(26734993-26735171)
chr6 (199-355)||(27506882-27507038)
chr6 (182-251)||(26627745-26627814)
chr6 (182-251)||(26733722-26733791)
chr6 (202-257)||(25078358-25078413)
chr6 (182-320)||(27419365-27419503)
chr6 (127-264)||(31288503-31288634)
chr6 (87-281)||(26889801-26889990)
chr6 (46-145)||(26856549-26856648)
chr6 (182-251)||(27702644-27702713)
chr6 (73-145)||(27424315-27424386)
chr6 (73-119)||(27507076-27507122)
chr6 (243-283)||(26060531-26060571)
chr6 (243-283)||(26080501-26080541)
chr6 (285-361)||(27423037-27423112)
chr6 (182-229)||(27423116-27423163)
chr6 (204-291)||(27424168-27424255)
[»] chr4 (8 HSPs)
chr4 (84-320)||(5082383-5082613)
chr4 (120-246)||(18675035-18675155)
chr4 (120-246)||(18719565-18719685)
chr4 (75-290)||(18683307-18683517)
chr4 (46-246)||(18693090-18693284)
chr4 (182-246)||(18685608-18685672)
chr4 (46-246)||(18650916-18651110)
chr4 (182-246)||(18726862-18726926)
[»] scaffold0003 (4 HSPs)
scaffold0003 (182-320)||(67860-67998)
scaffold0003 (73-291)||(62977-63195)
scaffold0003 (285-361)||(64251-64326)
scaffold0003 (182-229)||(64200-64247)


Alignment Details
Target: chr6 (Bit Score: 408; Significance: 0; HSPs: 27)
Name: chr6
Description:

Target: chr6; HSP #1
Raw Score: 408; E-Value: 0
Query Start/End: Original strand, 18 - 425
Target Start/End: Complemental strand, 27589184 - 27588777
Alignment:
Q  18 aatacgtagctgtcacataaggatgcttggaatccatctctcacagccttcagctgaatccctttggtccagaatttttaaaaggtgtagtggagtttgg 117  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589184 aatacgtagctgtcacataaggatgcttggaatccatctctcacagccttcagctgaatccctttggtccagaatttttaaaaggtgtagtggagtttgg 27589085  T
Q  118 caactttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgctttta 217  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27589084 caactttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgctttta 27588985  T
Q  218 atcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatatttctgaatatgcataacttgtcatttcttagggagtat 317  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588984 atcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatatttctgaatatgcataacttgtcatttcttagggagtat 27588885  T
Q  318 gaatactgttaatctatatatgtagcttttgtccaacaggtcaagttaaacttcatcttatatcatcgtttatatcaagttcaaaattgcaaaaacatgg 417  Q
    ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||    
T  27588884 gaatactgttaatctatatatgtagcttttgtccaacaggtcaagttaaacttcatcttatatcatcgtttatatcaagttcaaaattgcaaaaacatgg 27588785  T
Q  418 catctgtg 425  Q
    ||||||||    
T  27588784 catctgtg 27588777  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #2
Raw Score: 125; E-Value: 3e-64
Query Start/End: Original strand, 158 - 336
Target Start/End: Original strand, 26807069 - 26807242
Alignment:
Q  158 aaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattgg 257  Q
    ||||||||||||||||||||||||      ||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||    
T  26807069 aaagaatgttgttacaagtaagat------ccttatactttgaaagcataaatgcttttagtcataatctttgtgaaagatcttttgaaaaagaaattgg 26807162  T
Q  258 ttattat-cccaaagtaatatatttctgaatatgcataacttgtcatttcttagggagtatgaatactgttaatctatat 336  Q
    ||||||| ||||||||||||||||  ||||||||||||||||||||||||||||||||||| |||||||||||| |||||    
T  26807163 ttattatccccaaagtaatatattaatgaatatgcataacttgtcatttcttagggagtataaatactgttaatgtatat 26807242  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #3
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 361
Target Start/End: Original strand, 26639757 - 26639936
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatattt 281  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||| | || |||||||    
T  26639757 taagatccttatactttgaaaacataaatgcttttaatcataatctttgtgagaggtcttttaaaaaagaaattgattattatcccacaatattatattt 26639856  T
Q  282 ctgaatatgcataacttgtcatttcttagggagtatgaatactgttaatctatatatgtagcttttgtccaacaggtcaa 361  Q
    || ||||||||||||||||||||||||||||| ||||||||| |||||| || || ||| ||||| ||||||||||||||    
T  26639857 ctaaatatgcataacttgtcatttcttagggaatatgaatacagttaatgtaaatgtgttgctttcgtccaacaggtcaa 26639936  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #4
Raw Score: 112; E-Value: 2e-56
Query Start/End: Original strand, 182 - 361
Target Start/End: Original strand, 26745723 - 26745902
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatattt 281  Q
    ||||||||| ||||||||||| |||||||||||||||||||||||||||||| || |||||| |||||||||||| ||||||||||| | || |||||||    
T  26745723 taagatccttatactttgaaaacataaatgcttttaatcataatctttgtgagaggtcttttaaaaaagaaattgattattatcccacaatattatattt 26745822  T
Q  282 ctgaatatgcataacttgtcatttcttagggagtatgaatactgttaatctatatatgtagcttttgtccaacaggtcaa 361  Q
    || ||||||||||||||||||||||||||||| ||||||||| |||||| || || ||| ||||| ||||||||||||||    
T  26745823 ctaaatatgcataacttgtcatttcttagggaatatgaatacagttaatgtaaatgtgttgctttcgtccaacaggtcaa 26745902  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #5
Raw Score: 76; E-Value: 5e-35
Query Start/End: Original strand, 46 - 320
Target Start/End: Original strand, 26963616 - 26963890
Alignment:
Q  46 ggaatccatctctcacagcct---tcagctgaatccctttggtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaa 142  Q
    |||||||||||||||  ||||   ||||| | |||||||  |||||||| || |||||||||||||| || ||||||| ||||||| ||  || ||||||    
T  26963616 ggaatccatctctcagggcctccatcagcagcatcccttcagtccagaacttctaaaaggtgtagtg-agcttggcaaatttcacaaaacatcaaataaa 26963714  T
Q  143 ttgcaacagatcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttt 242  Q
    |||     |||||||   |||||||||||||||||||||      ||| ||||||||||| || ||||||| ||||||||||||||| ||||||||||||    
T  26963715 ttgttggggatcctaggtgaatgttgttacaagtaagat------ccttatactttgaaaccacaaatgctcttaatcataatctttatgaaagatcttt 26963808  T
Q  243 tgaaaaagaaattggttattatcccaaagtaatatatttctgaatatgcata----acttgtcatttcttagggagtatgaa 320  Q
    |||||||||||||| ||  ||||||| |||||||||||| | |||||||||     |||||||||||||||| ||| |||||    
T  26963809 tgaaaaagaaattgattgatatcccatagtaatatatttataaatatgcatgcatgacttgtcatttcttagagaggatgaa 26963890  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #6
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 314
Target Start/End: Original strand, 26650485 - 26650641
Alignment:
Q  152 atcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaaga 251  Q
    |||||||| |||||||||||||||||||||      ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  26650485 atcctaaatgaatgttgttacaagtaagat------ccttatactttgaaaccataaatgcttttaatcataatctttatgaaagatcttttgaagaaga 26650578  T
Q  252 aattggttattatcccaaagtaatatatttctgaatatgcataacttgtcatttcttagggag 314  Q
     |||| ||  ||| ||| |||| ||| ||| | |||| |||| ||||||||||||||||||||    
T  26650579 gattgatttctattccatagtattatttttataaatacgcatgacttgtcatttcttagggag 26650641  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #7
Raw Score: 72; E-Value: 1e-32
Query Start/End: Original strand, 152 - 314
Target Start/End: Original strand, 26756453 - 26756609
Alignment:
Q  152 atcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaaga 251  Q
    |||||||| |||||||||||||||||||||      ||| ||||||||||| |||||||||||||||||||||||||| |||||||||||||||| ||||    
T  26756453 atcctaaatgaatgttgttacaagtaagat------ccttatactttgaaaccataaatgcttttaatcataatctttatgaaagatcttttgaagaaga 26756546  T
Q  252 aattggttattatcccaaagtaatatatttctgaatatgcataacttgtcatttcttagggag 314  Q
     |||| ||  ||| ||| |||| ||| ||| | |||| |||| ||||||||||||||||||||    
T  26756547 gattgatttctattccatagtattatttttataaatacgcatgacttgtcatttcttagggag 26756609  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #8
Raw Score: 71; E-Value: 5e-32
Query Start/End: Original strand, 255 - 365
Target Start/End: Original strand, 25079082 - 25079192
Alignment:
Q  255 tggttattatcccaaagtaatatatttctgaatatgcataacttgtcatttcttagggagtatgaatactgttaatctatatatgtagcttttgtccaac 354  Q
    ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| |||| || |||||| |  || ||||| |||||||||||    
T  25079082 tggttattatcccaaagtaatatatttctaaatatgcataacttgtcatttcttagggagtgtgaagaccgttaatgtcaatgtgtagattttgtccaac 25079181  T
Q  355 aggtcaagtta 365  Q
    |||| ||||||    
T  25079182 aggtgaagtta 25079192  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #9
Raw Score: 66; E-Value: 5e-29
Query Start/End: Original strand, 75 - 227
Target Start/End: Complemental strand, 27660847 - 27660701
Alignment:
Q  75 atccctttggtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaa 174  Q
    |||||||  |||||||| ||||||||||||| |||||| ||||| |||||| |||||| |||||||||||||  |  |||||| | ||||||||||||||    
T  27660847 atcccttcagtccagaacttttaaaaggtgtggtggaggttggccactttctcacaatatctaataaattgcttcgaatcctagatgaatgttgttacaa 27660748  T
Q  175 gtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatct 227  Q
    |||      ||||||| |||||||||||| |||||||||||||||||||||||    
T  27660747 gta------agatccttatactttgaaagaataaatgcttttaatcataatct 27660701  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #10
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 361
Target Start/End: Original strand, 26629017 - 26629195
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatattt 281  Q
    |||||| || || |||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |   ||| | | ||||||||||||    
T  26629017 taagattcttatcctttgaaaccataaacgcttttaatcataatctttatgaaagatcttctgaaaaagaaattgatggctatacaatagtaatatattt 26629116  T
Q  282 ctgaatatgcataacttgtcatttcttagggagtatgaatactgttaatctatatatgtagcttttgtccaacaggtcaa 361  Q
     | ||  ||||| ||||||||||||||||  |||||||| || ||| ||  | || |||| |||||||||||||||||||    
T  26629117 ataaaagtgcatgacttgtcatttcttagaaagtatgaagacagtt-ataaaaatctgtatcttttgtccaacaggtcaa 26629195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #11
Raw Score: 60; E-Value: 2e-25
Query Start/End: Original strand, 182 - 361
Target Start/End: Original strand, 26734993 - 26735171
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatattt 281  Q
    |||||| || || |||||||| |||||| ||||||||||||||||||| ||||||||||| |||||||||||||| |   ||| | | ||||||||||||    
T  26734993 taagattcttatcctttgaaaccataaacgcttttaatcataatctttatgaaagatcttctgaaaaagaaattgatggctatacaatagtaatatattt 26735092  T
Q  282 ctgaatatgcataacttgtcatttcttagggagtatgaatactgttaatctatatatgtagcttttgtccaacaggtcaa 361  Q
     | ||  ||||| ||||||||||||||||  |||||||| || ||| ||  | || |||| |||||||||||||||||||    
T  26735093 ataaaagtgcatgacttgtcatttcttagaaagtatgaagacagtt-ataaaaatctgtatcttttgtccaacaggtcaa 26735171  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #12
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 199 - 355
Target Start/End: Complemental strand, 27507038 - 27506882
Alignment:
Q  199 gaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatatttctgaatatgcataactt 298  Q
    |||| ||||| |||||||||||||||||||| |||| ||||||||||| ||||||||| || |||| ||| || ||||||||| | ||||||||| ||||    
T  27507038 gaaatcataagtgcttttaatcataatctttatgaaggatcttttgaataagaaattgattgttattccatagcaatatatttataaatatgcatgactt 27506939  T
Q  299 gtcatttcttagggagtatgaatactgttaatctatatatgtagcttttgtccaaca 355  Q
    || |||| ||| | |||||||| ||  ||||| || ||   ||||||||||||||||    
T  27506938 gtaatttgttaagtagtatgaagacaattaatgtaaatggatagcttttgtccaaca 27506882  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #13
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 26627745 - 26627814
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaaga 251  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  26627745 taagatccttatacttcgaaagcataaatgcttttaatcataatctttatgaaagatcatttgaaaaaga 26627814  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #14
Raw Score: 54; E-Value: 7e-22
Query Start/End: Original strand, 182 - 251
Target Start/End: Original strand, 26733722 - 26733791
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaaga 251  Q
    ||||||||| |||||| ||||||||||||||||||||||||||||||| ||||||||| |||||||||||    
T  26733722 taagatccttatacttcgaaagcataaatgcttttaatcataatctttatgaaagatcatttgaaaaaga 26733791  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #15
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 202 - 257
Target Start/End: Original strand, 25078358 - 25078413
Alignment:
Q  202 agcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattgg 257  Q
    ||||||||||||||||||| ||||||||||||||||||||||||||||||||||||    
T  25078358 agcataaatgcttttaatcttaatctttgtgaaagatcttttgaaaaagaaattgg 25078413  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #16
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 320
Target Start/End: Complemental strand, 27419503 - 27419365
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatattt 281  Q
    ||||||||| ||||||||||||||||| | ||| |||||||||| |||  |||| ||||||| |||||||| ||| | ||||||| ||| ||||||||||    
T  27419503 taagatccttatactttgaaagcataagttcttataatcataatattttcgaaacatctttttaaaaagaagttgatcattatccgaaaataatatattt 27419404  T
Q  282 ctgaatatgcataacttgtcatttcttagggagtatgaa 320  Q
       ||||   |||||||||||||||||||| | ||||||    
T  27419403 tcaaatagcaataacttgtcatttcttaggtattatgaa 27419365  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #17
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 127 - 264
Target Start/End: Original strand, 31288503 - 31288634
Alignment:
Q  127 cacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatc 226  Q
    ||||| ||||||||||||||  |||||| |||| |||||||||||  ||||||||       || ||||||||||||||||||||||||||||||||| |    
T  31288503 cacaacgtctaataaattgcggcagatcttaaatgaatgttgttatgagtaagata------cttatactttgaaagcataaatgcttttaatcataaac 31288596  T
Q  227 tttgtgaaagatcttttgaaaaagaaattggttattat 264  Q
    ||| |||||||| |||| | |||||| ||| |||||||    
T  31288597 tttatgaaagatattttcagaaagaagttgattattat 31288634  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #18
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 87 - 281
Target Start/End: Original strand, 26889801 - 26889990
Alignment:
Q  87 cagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaagtaagattaaga 186  Q
    ||||| || ||||||||||||||||| ||||| |||||||||||| ||||||||||||||| | | ||| | | |||||  |||||| |      |||||    
T  26889801 cagaacttctaaaaggtgtagtggagattggccactttcacacaaagtctaataaattgcaccgggtccaagatgaatggagttacagg------taaga 26889894  T
Q  187 tcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatctttt-gaaaaagaaattggttattatcccaaagtaatatattt 281  Q
    |||  ||||||  ||||||||||||| | |||||||||||||| |  |||||||||| |||||| |||||| || |||| | | ||||||||||||    
T  26889895 tccctatacttataaagcataaatgcgtgtaatcataatctttattgaagatcttttggaaaaaaaaattgattgttattcaatagtaatatattt 26889990  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #19
Raw Score: 48; E-Value: 3e-18
Query Start/End: Original strand, 46 - 145
Target Start/End: Original strand, 26856549 - 26856648
Alignment:
Q  46 ggaatccatctctcacagccttcagctgaatccctttggtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattg 145  Q
    ||||| |||||||||| | || ||||||||||||||||||||| || || |||||||||||||| || ||| | | |||||||||| |||||||||||||    
T  26856549 ggaattcatctctcacggtctccagctgaatccctttggtccataacttctaaaaggtgtagtgaaggttgaccattttcacacaacgtctaataaattg 26856648  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #20
Raw Score: 42; E-Value: 0.00000000000001
Query Start/End: Original strand, 182 - 251
Target Start/End: Complemental strand, 27702713 - 27702644
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaaga 251  Q
    ||||||| | |||||| ||||||||||||| ||||||||||||||||| ||||||||  |||||||||||    
T  27702713 taagatctttatacttcgaaagcataaatggttttaatcataatctttatgaaagattatttgaaaaaga 27702644  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #21
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 145
Target Start/End: Complemental strand, 27424386 - 27424315
Alignment:
Q  73 gaatccctttggtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattg 145  Q
    ||||||||||||||||||| |||||| |||||||||||||  ||| ||||||||||||| |||| ||||||||    
T  27424386 gaatccctttggtccagaacttttaataggtgtagtggag-ctggaaactttcacacaaggtcttataaattg 27424315  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #22
Raw Score: 35; E-Value: 0.0000000002
Query Start/End: Original strand, 73 - 119
Target Start/End: Complemental strand, 27507122 - 27507076
Alignment:
Q  73 gaatccctttggtccagaatttttaaaaggtgtagtggagtttggca 119  Q
    ||||||||||||||||||| ||||||||||||||||| || ||||||    
T  27507122 gaatccctttggtccagaacttttaaaaggtgtagtgcagcttggca 27507076  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #23
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 26060531 - 26060571
Alignment:
Q  243 tgaaaaagaaattggttattatcccaaagtaatatatttct 283  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  26060531 tgaaaaagaaattgattattatgccaaagtaatatatttct 26060571  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #24
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 243 - 283
Target Start/End: Original strand, 26080501 - 26080541
Alignment:
Q  243 tgaaaaagaaattggttattatcccaaagtaatatatttct 283  Q
    |||||||||||||| ||||||| ||||||||||||||||||    
T  26080501 tgaaaaagaaattgattattatgccaaagtaatatatttct 26080541  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #25
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Complemental strand, 27423112 - 27423037
Alignment:
Q  285 aatatgcataacttgtcatttcttagggagtatgaatactgttaatctatatatgtagcttttgtccaacaggtcaa 361  Q
    ||||||||| |||||||||||||||||| ||||||| || ||| ||  | || |||| |||||||||||||||||||    
T  27423112 aatatgcatgacttgtcatttcttagggtgtatgaagaccgtt-ataaaaatgtgtatcttttgtccaacaggtcaa 27423037  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #26
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 229
Target Start/End: Complemental strand, 27423163 - 27423116
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatcttt 229  Q
    ||||||||| ||||||||||| ||||||| |||||||| |||||||||    
T  27423163 taagatccttatactttgaaaccataaatacttttaattataatcttt 27423116  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr6; HSP #27
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 204 - 291
Target Start/End: Complemental strand, 27424255 - 27424168
Alignment:
Q  204 cataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatatttctgaatatgc 291  Q
    ||||||||||||| |||||||| ||| | ||||||  |||||||||||||||| ||   ||| || |||||||||||| | |||||||    
T  27424255 cataaatgcttttgatcataatatttataaaagataatttgaaaaagaaattgattgccatctcatagtaatatatttataaatatgc 27424168  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4 (Bit Score: 90; Significance: 2e-43; HSPs: 8)
Name: chr4
Description:

Target: chr4; HSP #1
Raw Score: 90; E-Value: 2e-43
Query Start/End: Original strand, 84 - 320
Target Start/End: Original strand, 5082383 - 5082613
Alignment:
Q  84 gtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaagtaagatta 183  Q
    |||||||| |||||||||||||||||||  ||||| |||| ||||||| ||||||||||||||  | ||||||| | ||| | |||||||||||||||      
T  5082383 gtccagaacttttaaaaggtgtagtggaagttggccacttccacacaacgtctaataaattgcggcggatcctagatgaacgctgttacaagtaagat-- 5082480  T
Q  184 agatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatatttct 283  Q
        ||| || ||||||||| ||||||||||||||||||| ||| || |||||||| ||| |||||||||||| | ||||||| ||| ||||||||||      
T  5082481 ----ccttatgctttgaaagtataaatgcttttaatcatagtctctgggaaagatcctttcaaaaagaaattgatcattatcctaaaataatatattttc 5082576  T
Q  284 gaatatgcataacttgtcatttcttagggagtatgaa 320  Q
     |||||| |||||||||||||||||||| | ||||||    
T  5082577 aaatatgaataacttgtcatttcttaggtattatgaa 5082613  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #2
Raw Score: 56; E-Value: 5e-23
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 18675155 - 18675035
Alignment:
Q  120 actttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaat 219  Q
    |||||||||||  |||||||||||||   | ||||||| | |||||||||||||||||||||      ||| |||||||||||||||||||| |||||||    
T  18675155 actttcacacagcgtctaataaattgtgccggatcctagatgaatgttgttacaagtaagat------ccttatactttgaaagcataaatggttttaat 18675062  T
Q  220 cataatctttgtgaaagatcttttgaa 246  Q
    |||||||| | ||||||||||||||||    
T  18675061 cataatctctatgaaagatcttttgaa 18675035  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #3
Raw Score: 52; E-Value: 1e-20
Query Start/End: Original strand, 120 - 246
Target Start/End: Complemental strand, 18719685 - 18719565
Alignment:
Q  120 actttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaat 219  Q
    |||||||||||| |||||||||||||   | ||||||| | |||| ||||||||||||||||      ||| |||||||||||||| ||||| |||||||    
T  18719685 actttcacacaacgtctaataaattgtgccggatcctagatgaatattgttacaagtaagat------ccttatactttgaaagcaaaaatggttttaat 18719592  T
Q  220 cataatctttgtgaaagatcttttgaa 246  Q
    |||||||| | ||||||||||||||||    
T  18719591 cataatctctatgaaagatcttttgaa 18719565  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #4
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 75 - 290
Target Start/End: Complemental strand, 18683517 - 18683307
Alignment:
Q  75 atccctttggtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttacaa 174  Q
    |||||||  |||| ||| || ||||||||| ||||||  || || ||| ||| |||  |||||||||||||   | ||||||| | ||||||||||||||    
T  18683517 atcccttgagtcccgaacttctaaaaggtgcagtggacgtttgccactctcatacagcgtctaataaattgtgccggatcctacatgaatgttgttacaa 18683418  T
Q  175 gtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaa-aaagaaattggttattatcccaaagta 273  Q
    |||||||      ||| |||||||||||||||||||  ||||||||||||| | | |||||||||||||||| ||| |  |||||| |||| ||| ||||    
T  18683417 gtaagat------ccttatactttgaaagcataaattgttttaatcataatttctatgaaagatcttttgaataaaaacgttggttgttattccatagta 18683324  T
Q  274 atatatttctgaatatg 290  Q
    |||| ||||| ||||||    
T  18683323 atatttttctaaatatg 18683307  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #5
Raw Score: 50; E-Value: 2e-19
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 18693284 - 18693090
Alignment:
Q  46 ggaatccatctctcacagccttcagctgaatccctttggtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattg 145  Q
    |||||||||||||||  |||| ||| || |||||||  ||||  || || | ||||||| ||||||  || || |||||||| ||  ||||||||||||     
T  18693284 ggaatccatctctcagggcctccagatgtatcccttcagtcccaaacttctgaaaggtgcagtggacgtttgccactttcacgcagcgtctaataaatta 18693185  T
Q  146 caacagatcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttga 245  Q
       | ||||||| | |||||||||||||||||||||      ||| |||| ||||||||||||||| ||||||||||||||| | |||||||||||||||    
T  18693184 tggcggatcctagatgaatgttgttacaagtaagat------ccttataccttgaaagcataaatggttttaatcataatctctatgaaagatcttttga 18693091  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #6
Raw Score: 49; E-Value: 7e-19
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 18685672 - 18685608
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaa 246  Q
    ||||||||| |||||||||||||||||||| ||||||||||||||| | ||||||||||||||||    
T  18685672 taagatccttatactttgaaagcataaatggttttaatcataatctctatgaaagatcttttgaa 18685608  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #7
Raw Score: 46; E-Value: 4e-17
Query Start/End: Original strand, 46 - 246
Target Start/End: Complemental strand, 18651110 - 18650916
Alignment:
Q  46 ggaatccatctctcacagccttcagctgaatccctttggtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattg 145  Q
    ||||||||||| |||  |||| ||| || |||||||  |||| ||| || ||||||||| ||||||  || || |||||||| ||  ||||||||||||     
T  18651110 ggaatccatctgtcagtgcctccagatgtatcccttcagtcccgaacttctaaaaggtgcagtggacgtttgccactttcacgcagcgtctaataaatta 18651011  T
Q  146 caacagatcctaaaagaatgttgttacaagtaagattaagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttga 245  Q
       | ||||||| | |||||||||| ||||||||||      ||| |||||||||||| ||||||| |||||||||||||||   |||||||||||||||    
T  18651010 tggcggatcctagatgaatgttgttgcaagtaagat------ccttatactttgaaagtataaatggttttaatcataatctcaatgaaagatcttttga 18650917  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: chr4; HSP #8
Raw Score: 45; E-Value: 2e-16
Query Start/End: Original strand, 182 - 246
Target Start/End: Complemental strand, 18726926 - 18726862
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaa 246  Q
    ||||||||| |||||||||||||| ||||| ||||||||||||||| | ||||||||||||||||    
T  18726926 taagatccttatactttgaaagcaaaaatggttttaatcataatctctatgaaagatcttttgaa 18726862  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003 (Bit Score: 51; Significance: 4e-20; HSPs: 4)
Name: scaffold0003
Description:

Target: scaffold0003; HSP #1
Raw Score: 51; E-Value: 4e-20
Query Start/End: Original strand, 182 - 320
Target Start/End: Original strand, 67860 - 67998
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaaagtaatatattt 281  Q
    ||||||||| ||||||||||||||||| | ||| |||||||||| |||  |||| ||||||| |||||||| ||| | ||||||| ||| ||||||||||    
T  67860 taagatccttatactttgaaagcataagttcttataatcataatattttcgaaacatctttttaaaaagaagttgatcattatccgaaaataatatattt 67959  T
Q  282 ctgaatatgcataacttgtcatttcttagggagtatgaa 320  Q
       ||||   |||||||||||||||||||| | ||||||    
T  67960 tcaaatagcaataacttgtcatttcttaggtattatgaa 67998  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #2
Raw Score: 41; E-Value: 0.00000000000004
Query Start/End: Original strand, 73 - 291
Target Start/End: Original strand, 62977 - 63195
Alignment:
Q  73 gaatccctttggtccagaatttttaaaaggtgtagtggagtttggcaactttcacacaatgtctaataaattgcaacagatcctaaaagaatgttgttac 172  Q
    ||||||||||||||||||| |||||| ||||||||||||| | || ||||||||||||| |||| ||||||||  || |||| | ||  || ||||||||    
T  62977 gaatccctttggtccagaacttttaataggtgtagtggagct-ggaaactttcacacaaggtcttataaattgggacggatcatgaattaacgttgttac 63075  T
Q  173 aagtaaga---ttaagatcctaatactttgaaagcataaatgcttttaatcataatctttgtgaaagatcttttgaaaaagaaattggttattatcccaa 269  Q
    ||| ||||   |||   | | || | |||||   ||||||||||||| |||||||| ||| | ||||||  |||||||||||||||| ||   ||| ||     
T  63076 aagcaagacccttatacttcgaagattttgat--cataaatgcttttgatcataatatttataaaagataatttgaaaaagaaattgattgccatctcat 63173  T
Q  270 agtaatatatttctgaatatgc 291  Q
    |||||||||||| | |||||||    
T  63174 agtaatatatttataaatatgc 63195  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #3
Raw Score: 33; E-Value: 0.000000002
Query Start/End: Original strand, 285 - 361
Target Start/End: Original strand, 64251 - 64326
Alignment:
Q  285 aatatgcataacttgtcatttcttagggagtatgaatactgttaatctatatatgtagcttttgtccaacaggtcaa 361  Q
    ||||||||| |||||||||||||||||| ||||||| || ||| ||  | || |||| |||||||||||||||||||    
T  64251 aatatgcatgacttgtcatttcttagggtgtatgaagaccgtt-ataaaaatgtgtatcttttgtccaacaggtcaa 64326  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]

Target: scaffold0003; HSP #4
Raw Score: 32; E-Value: 0.00000001
Query Start/End: Original strand, 182 - 229
Target Start/End: Original strand, 64200 - 64247
Alignment:
Q  182 taagatcctaatactttgaaagcataaatgcttttaatcataatcttt 229  Q
    ||||||||| ||||||||||| ||||||| |||||||| |||||||||    
T  64200 taagatccttatactttgaaaccataaatacttttaattataatcttt 64247  T

Back To: [ HSP Overview ] [ Target Overview ] [ Alignment Overview ]



© Oklahoma State University