View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_high_2 (Length: 695)
Name: NF19267_high_2
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_2 |
 | |
|
| [»] scaffold0400 (2 HSPs) |
| | |
|
| [»] scaffold0365 (2 HSPs) |
| | |
|
Alignment Details
Target: chr1 (Bit Score: 540; Significance: 0; HSPs: 12)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 540; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 15010972 - 15010288
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15010972 |
taagatcaagattttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacatagacaa |
15010873 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010872 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
15010773 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15010772 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
15010673 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
|||||||||||||||| || ||||||||||||||||| |||||| ||||||||||| ||||||||||||| ||||||| | ||||||||||||||||| |
|
|
| T |
15010672 |
cctgtaaatttgttgcacttcctagttctggtggtattcttcctgttaaattattaccagagatttttaggcttgtgagaatcttgcactttccccaatt |
15010573 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||||| ||||||||||||||||||||||||||||||||||||||| || ||||||||| |
|
|
| T |
15010572 |
tggagaaagatgaccataaaaattattatcactcaattccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtaagttggttt |
15010473 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcc |
600 |
Q |
| |
|
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| || | |||| ||||||| |
|
|
| T |
15010472 |
tgatcaagcctcagtctcgtaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcagcagtgaatgtttttaacttcc |
15010373 |
T |
|
| Q |
601 |
caccgacacatatattgtgaggtaaatgaccaacaaaattattatcggataaatcgagtccttccaaatcggtaagtctattcat |
685 |
Q |
| |
|
|||| ||||| ||||||||||||||||||||||||||| ||||||| ||||||| |||| ||||||||||| |||| |||||||| |
|
|
| T |
15010372 |
caccaacacaaatattgtgaggtaaatgaccaacaaaaatattatcagataaatggagtacttccaaatcgataagcctattcat |
15010288 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 496; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 15002079 - 15001395
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15002079 |
taagatcaaggttttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacatagacaa |
15001980 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
|||||||||||||| ||||||||| ||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15001979 |
cataccaagtttttcagggatgaatccactcaaattatttgttgcaagctccaatgcagttagttgatgcaatgatgcaatttgtactggaacttctcca |
15001880 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
||||||||||||||||||| |||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||||| |
|
|
| T |
15001879 |
taaagatgattgttacttaacgagagtttgatcaacaaagataagttttctaactcctttggaatttttcgcattagatggtttgaagacaagttaagct |
15001780 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||| | |||||||| |||||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
15001779 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagatttttaggcttgtgagattcttgcactttccccaatt |
15001680 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| || |||||||| | ||| ||||||||||||||||| || |||||||||||||| |||||||||||| |
|
|
| T |
15001679 |
tggagaaagatgaccataaaaattattatcactcaaatccatgtattccaaatttggatacacaccaaagctgtctgttatatttccagtcagttggttt |
15001580 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcc |
600 |
Q |
| |
|
|| | ||| |||| |||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | | |||| ||||||| |
|
|
| T |
15001579 |
tgttgaagtctcactctcgtaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtgcaacagtgaacatttttaacttcc |
15001480 |
T |
|
| Q |
601 |
caccgacacatatattgtgaggtaaatgaccaacaaaattattatcggataaatcgagtccttccaaatcggtaagtctattcat |
685 |
Q |
| |
|
||||| ||| ||||||||||||||||||||||||||||||||||| ||||||| |||| |||||||||| ||||| |||||||| |
|
|
| T |
15001479 |
caccgttacaaatattgtgaggtaaatgaccaacaaaattattatcagataaatggagtacttccaaatctgtaagcctattcat |
15001395 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 492; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 15036992 - 15036308
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || |||||| |||||||||||||||||||||||| ||||||| |
|
|
| T |
15036992 |
taagatcaaggttttcaataacattcaattggccaaactcaacaggaatgttcccctcaagcttattatggctcaaattcaactgcaataacctagacaa |
15036893 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||| || |||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
15036892 |
cataccaagtttttccaggatgaagccacttaagttatttgttgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
15036793 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
|||||||||||||||||||| ||||||||||||||||||||||| |||| || |||||||||||||||||||||||||| |||||||||||||||||||| |
|
|
| T |
15036792 |
gaaagatgattgttacttaacgagagtttgaacaacaaagataaatattttagctcctttggaatttttcccattagatcgtttgaagacaagttaagct |
15036693 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||| ||||| ||||||||||| |||||||||||||| ||||||||| ||||||||||||||||| |
|
|
| T |
15036692 |
cctgtaaatttgttgctctgcctagttctggtggtattcttccagttaaattattaccggagatttttaggcttgtgagattcttgcactttccccaatt |
15036593 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||| |
|
|
| T |
15036592 |
tggagaaagatgaccataaaaattattatcactcaagtccatgtagtccaagtttggatacacaccaaaactctctgttatatttccagtcagttggttt |
15036493 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcc |
600 |
Q |
| |
|
|| | |||||||| ||||| |||||||||||||||||||||||||||||||||||||||| ||||||||||||||| || | |||| ||||||| |
|
|
| T |
15036492 |
tggttaagcctcaatctctcaaggcttgagcaattcttcaaactctctggaactaggcctctgaactggttaagtgcagcagtgaatgtttttaacttcc |
15036393 |
T |
|
| Q |
601 |
caccgacacatatattgtgaggtaaatgaccaacaaaattattatcggataaatcgagtccttccaaatcggtaagtctattcat |
685 |
Q |
| |
|
|||||||||| |||||||||||||||||||||| ||| |||||||| |||| |||||| |||||||||| ||||| |||||||| |
|
|
| T |
15036392 |
caccgacacaaatattgtgaggtaaatgaccaataaatttattatcatataattcgagtacttccaaatccgtaagcctattcat |
15036308 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 15025089 - 15024405
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| || |
|
|
| T |
15025089 |
taagatcaagattttcaataacattcaattgggcaaactcagcaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacctagataa |
15024990 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
15024989 |
cctaccaagtcttttagggatgaagccactcaaattatttgttgcaagctccaatgcagttagctcgtgcaatgatgcaatttgtacaggaacttctcca |
15024890 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15024889 |
gaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatttttcccgttagatggtttgaagacaagttaagct |
15024790 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| |||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
15024789 |
cctgtaaatttgttgcgctgcctagctctggtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatt |
15024690 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
15024689 |
tggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttt |
15024590 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcc |
600 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| || | |||| | ||||| |
|
|
| T |
15024589 |
tgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcc |
15024490 |
T |
|
| Q |
601 |
caccgacacatatattgtgaggtaaatgaccaacaaaattattatcggataaatcgagtccttccaaatcggtaagtctattcat |
685 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
15024489 |
caccgacacaaatattgtgaggtaaatgaccaacaaaattattaacatctaaatggagtgcttccaaatcggtaagcctattcat |
15024405 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 460; E-Value: 0
Query Start/End: Original strand, 1 - 685
Target Start/End: Complemental strand, 15032430 - 15031746
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| ||||||||||||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||| |||| || |
|
|
| T |
15032430 |
taagatcaagattttcaataacattcaattgggcaaactcagcaggaatgttcccctcaaacttattttggctcaaatttaactgcaataacctagataa |
15032331 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| |||||||| ||||||||||||||||||||||||||||| |||||||||||||||||||||| | ||||||||||||||||||||||||||||||||| |
|
|
| T |
15032330 |
cctaccaagtcttttagggatgaagccactcaaattatttgttgcaagctccaatgcagttagctcgtgcaatgatgcaatttgtacaggaacttctcca |
15032231 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
||||| |||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||||||| ||||||||||||||||||||||||||| |
|
|
| T |
15032230 |
gaaaggtgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaatttttcccgttagatggtttgaagacaagttaagct |
15032131 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
|||||||||||||||| |||||||| ||||||||||| |||||| ||||||||||| |||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
15032130 |
cctgtaaatttgttgcgctgcctagctctggtggtattcttcctgttaaattattaccagagattttaaggcttgtgagattcttgcactttccccaatt |
15032031 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
||||||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
15032030 |
tggagaaagatgaccataaaaattattatcattcaagtccatgtagtacaagtttggatacacaccaaaactatttgttatatttccagtcagttggttt |
15031931 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcc |
600 |
Q |
| |
|
||||||||||||| ||| ||||||||| ||||||||||||||||||||||||||| ||| ||||||||||||||| || | |||| | ||||| |
|
|
| T |
15031930 |
tgatcaagcctcactcttttaaggcttaagcaattcttcaaactctctggaactaagccagtgaactggttaagtccagcagtgaatttttttatcttcc |
15031831 |
T |
|
| Q |
601 |
caccgacacatatattgtgaggtaaatgaccaacaaaattattatcggataaatcgagtccttccaaatcggtaagtctattcat |
685 |
Q |
| |
|
|||||||||| ||||||||||||||||||||||||||||||||| | ||||| |||| |||||||||||||||| |||||||| |
|
|
| T |
15031830 |
caccgacacaaatattgtgaggtaaatgaccaacaaaattattaacatctaaatggagtgcttccaaatcggtaagcctattcat |
15031746 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 449; E-Value: 0
Query Start/End: Original strand, 1 - 682
Target Start/End: Complemental strand, 15017087 - 15016406
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| |||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||||||||| |||| ||||||| ||||||| |
|
|
| T |
15017087 |
taagatcaagattttcaataacattcaattggccaaactcaacaggaatgttcccctcaaacttattttggctcaaatttaacttcaataacctagacaa |
15016988 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
|||||||||||||| ||||||||||||||| ||||||||| |||||||||||||||||||| || ||||||||| |||||||| |||||||||||||| |
|
|
| T |
15016987 |
cataccaagtttttcagggatgaagccactgaaattatttgctgcaagctccaatgcagttaattcgtgcaatgattcaatttgttcaggaacttctcca |
15016888 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
|||||||||||||||||||| |||||||||| |||||||||||||| ||||| ||||||||||||||| ||| | ||||||||||||||||||||||| | |
|
|
| T |
15016887 |
gaaagatgattgttacttaacgagagtttgatcaacaaagataagttttctagctcctttggaattttccccgtaagatggtttgaagacaagttaagtt |
15016788 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
| |||||||||||||||||||||||||||||||||||||||||| | |||||||| ||||||||||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
15016787 |
catgtaaatttgttgctctgcctagttctggtggtatgcttcctgtcaaattattgttggagattttaaggcttgtgagattcttgcactttccccaatt |
15016688 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
|||||||| |||||||| |||||||||||||| || |||||||||| |||||||||||||||||||||||| | |||||||||||| |||||||||||| |
|
|
| T |
15016687 |
tggagaaatttgaccatacaaattattatcactcaattccatgtagtccaagtttggatacacaccaaaactatttgttatatttccagtcagttggttt |
15016588 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagtggagtaatgaannnnnnnaacttcc |
600 |
Q |
| |
|
|| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | || | ||| ||||||| |
|
|
| T |
15016587 |
tgttcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggttaagagcagcagagaatttttccaacttcc |
15016488 |
T |
|
| Q |
601 |
caccgacacatatattgtgaggtaaatgaccaacaaaattattatcggataaatcgagtccttccaaatcggtaagtctatt |
682 |
Q |
| |
|
|||||||||| ||||| ||||||||||||||||||||||||||||| | ||||||||| ||| |||||||||||| ||||| |
|
|
| T |
15016487 |
caccgacacaaatattatgaggtaaatgaccaacaaaattattatcatacaaatcgagtgctttcaaatcggtaagcctatt |
15016406 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #7
Raw Score: 245; E-Value: 1e-135
Query Start/End: Original strand, 1 - 552
Target Start/End: Original strand, 14522764 - 14523315
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| | |||||||||||||||||| |||| ||| |||||||||| || | |||||||||||||||||||||||||||||||||| ||||||| |
|
|
| T |
14522764 |
taagatcaagatcttcaataacattcaattgaccaagttcaacaggaatgtttccttcaaacttattttggctcaaattcaactgcaataacctagacaa |
14522863 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| | |||||||||| |||||| || ||||| ||||||||| ||||||| ||||||| |||||||| ||||||||||||||| || | |||||||||||| |
|
|
| T |
14522864 |
ccttccaagtttttcagggataaaaccacttaaattatttgttgcaagatccaatgtagttagttcatgcaatgatgcaatctgcataggaacttctccc |
14522963 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
||||||||||| ||||||| ||||||| || || |||||||| | ||| ||||||||||||||||| || || || ||||| ||||||| ||| |
|
|
| T |
14522964 |
gaaagatgattattacttatcgagagttggatcagtgcagataagtttcctagatcctttggaatttttcctataagttgatttgaggacaagtcaagta |
14523063 |
T |
|
| Q |
301 |
cctgtaaatttgttgct-ctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaat |
399 |
Q |
| |
|
|||||||| |||||| | ||| | |||||||||||||||||||||||||||||||||||||||||| |||| ||| ||||| |||||||| ||||||| |
|
|
| T |
14523064 |
tatgtaaattggttgcttcagccaa-ttctggtggtatgcttcctattaaattattattggagattttaaggcttgtcagattcttgcacttcccccaat |
14523162 |
T |
|
| Q |
400 |
ttggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggtt |
499 |
Q |
| |
|
|||||||||||| |||||||||||||||||||||||| || ||||||| ||| |||||||||||||||||||| |||||||||||||| |||| || ||| |
|
|
| T |
14523163 |
ttggagaaagataaccataaaaattattatcacttaattctatgtagtccaaatttggatacacaccaaaactatctgttatatttcctgtcattttgtt |
14523262 |
T |
|
| Q |
500 |
ttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaa |
552 |
Q |
| |
|
||| | ||| |||| ||| ||||||| || || ||||||||||||||||||| |
|
|
| T |
14523263 |
ttggttaagtctcaatcttataaggctagaacagttcttcaaactctctggaa |
14523315 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #8
Raw Score: 215; E-Value: 1e-117
Query Start/End: Original strand, 3 - 572
Target Start/End: Complemental strand, 14503952 - 14503383
Alignment:
| Q |
3 |
agatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaaca |
102 |
Q |
| |
|
|||||||| | |||||||||||| ||| ||||||||||| | |||||||| || | |||||||||||||||||||||||| || | |||| ||||||| |
|
|
| T |
14503952 |
agatcaagatcttcaataacatttaatcggccaaactcaacgggaatgtttccttcaaacttattttggctcaaattcaaatgtattaactcagacaacc |
14503853 |
T |
|
| Q |
103 |
taccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctccaga |
202 |
Q |
| |
|
| |||||| || |||||||||||||||| ||||||||| ||||||||||||| | ||||||| ||||||||||||||||||| |||||| |||||||| |
|
|
| T |
14503852 |
ttccaagtcttctagggatgaagccacttaaattatttgttgcaagctccaaggtagttagtgcttgcaatgatgcaatttgtataggaacctctccaga |
14503753 |
T |
|
| Q |
203 |
aagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagctcc |
302 |
Q |
| |
|
||||||||||||||||| |||||||||| ||||||||| |||| | ||| ||||||||||||||||| | ||||||||||| ||||||||||| || |
|
|
| T |
14503752 |
aagatgattgttacttatcgagagtttgatcaacaaagacaagtttcctagatcctttggaatttttccagtaagatggtttgatgacaagttaagttca |
14503653 |
T |
|
| Q |
303 |
tgtaaatttgttg-ctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaattt |
401 |
Q |
| |
|
|||||||| ||| ||| ||| | |||| ||||||| ||||| ||||||| |||||||||||||| |||| ||||||| | |||||||||||||||||| |
|
|
| T |
14503652 |
tgtaaattaattgtctcagcc-aattcttgtggtatatttcctgttaaattgttattggagattttaaggcttgtgagactcttgcactttccccaattt |
14503554 |
T |
|
| Q |
402 |
ggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggtttt |
501 |
Q |
| |
|
|| || ||||| ||||| |||||||| ||||| || |||||||||| ||| | |||||| |||||||||| |||||||||||||| || | ||| |||| |
|
|
| T |
14503553 |
ggtgatagatggccatacaaattattttcactcaattccatgtagtccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgatttt |
14503454 |
T |
|
| Q |
502 |
gatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
572 |
Q |
| |
|
| |||||| | ||| ||||||| ||||||||||| ||||||| ||||| | | |||||||| |||||| |
|
|
| T |
14503453 |
tttgaagcctaactctaataaggctggagcaattctttaaactctttggaattggccctgtgaattggtta |
14503383 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #9
Raw Score: 208; E-Value: 1e-113
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 14467775 - 14467204
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| | ||||| |||||| |||||||||||||| |||||||||| || | |||| |||||| ||| |||||||| || |||||||| ||||| |
|
|
| T |
14467775 |
taagatcaagatcttcaagaacatttaattggccaaactcgacaggaatgtttccttcaaacatatttttgcttaaattcaagtgtaataacattgacaa |
14467676 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| ||||||| ||| ||||| | ||||| ||||||||| ||| ||||||||| | | ||||| ||||||||||||| |||| ||||||||||||| |
|
|
| T |
14467675 |
acttccaagttgttttgggattgaaccacttaaattatttgttgaaagctccaaggtatctagtttttgcaatgatgcaacttgtgcaggaacttctcct |
14467576 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
||||||||||||||||||| ||||||| || ||||||||||||| ||||| ||||||||||||||||||| | |||||||||||||||| ||| || | |
|
|
| T |
14467575 |
gaaagatgattgttacttaccgagagttggatcaacaaagataagctttctagctcctttggaatttttcccgtaagatggtttgaagacaggtttagtt |
14467476 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
| |||||||||||||||| |||||||||||| |||||||||||| ||||||| |||||| ||||||| |||| ||||||||| |||| ||||||||||| |
|
|
| T |
14467475 |
catgtaaatttgttgctcggcctagttctggcggtatgcttcctgttaaattgttattgaagattttaaggcatgtgagattcatgcattttccccaatt |
14467376 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
|| || ||||| ||||| |||||||||||||| || |||||||||| ||| ||||||| ||| ||||| || |||||||| | || ||||| ||| |
|
|
| T |
14467375 |
cggtgatagatggccatacaaattattatcactcaattccatgtagtccaattttggatgcacgccaaaggcatcagttatattgtcagttagttgattt |
14467276 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
572 |
Q |
| |
|
|| | |||||| | ||| | |||||| ||||| ||||||||||||| ||||| | |||||||||| |||||| |
|
|
| T |
14467275 |
tgttgaagccttactctataaaggctagagcagttcttcaaactctttggaattgggcctgtgaattggtta |
14467204 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #10
Raw Score: 188; E-Value: 1e-101
Query Start/End: Original strand, 1 - 572
Target Start/End: Original strand, 14532885 - 14533456
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| | ||||||||| || |||||| |||||||| |||||||||| || | ||||||||||||||||||||||| || | |||| |||||| |
|
|
| T |
14532885 |
taagatcaagatcttcaataacctttaattggtcaaactcaacaggaatgtttccttcgaacttattttggctcaaattcaaatgtattaactcagacaa |
14532984 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| | |||||| || |||||||||||||||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
14532985 |
ccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggcagttagtgcctgcagtgatgcaatttgtacaggaacttctccc |
14533084 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
|||||| ||||||| ||| |||||||||| ||||||||||||| | ||| ||||| |||||||||||| | |||||||||||||||| ||||| | |
|
|
| T |
14533085 |
aaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctctggaatttttccagtaagatggtttgaagacagattaagtt |
14533184 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
| ||||| | |||||||| ||||||||| | ||||||||||| |||||||||| |||||||||| || | |||||| || |||||||| |||||||| |
|
|
| T |
14533185 |
cttgtaattgtgttgctccacctagttcttgaggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatt |
14533284 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
||| || | ||| |||||||||||||||||||| || |||||||||| ||| ||||||||||| ||||| || |||||||| | || | ||| ||| |
|
|
| T |
14533285 |
tggtgatatatggccataaaaattattatcactcaattccatgtagtccaaatttggatacacgccaaaggcatcagttatattgtcagttatttgattt |
14533384 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
572 |
Q |
| |
|
|| | ||| || | ||| |||| || ||||| ||||||||||||| ||||| | |||||||||| |||||| |
|
|
| T |
14533385 |
tgttgaagtcttactctgataagactggagcacttcttcaaactctttggaattgggcctgtgaattggtta |
14533456 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #11
Raw Score: 125; E-Value: 5e-64
Query Start/End: Original strand, 1 - 568
Target Start/End: Complemental strand, 15040731 - 15040161
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| ||||||||||| || || || |||| |||| |||||||||| || | ||||||||||||||||| ||| || || ||||||||||| || |
|
|
| T |
15040731 |
taagatcaagattttcaataacttttaactgtccaatctcatcaggaatgtttccttcaaacttattttggctcatatttaagtgtaataacatagataa |
15040632 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| ||||||| ||| |||| ||||||||| ||||||||| |||| |||||||| || | || | |||||| |||||||||||||||||||| || |
|
|
| T |
15040631 |
tcttccaagttgttttgggacgaagccacttaaattatttgttgccagctccaagatagcaacttccttcaatgaggcaatttgtacaggaacttcccct |
15040532 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagttt---gaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaa |
297 |
Q |
| |
|
|||| | |||| |||||| ||||||| || ||| ||||||||| ||| |||| ||||||||| ||| |||| || || || ||||| | || |
|
|
| T |
15040531 |
gaaaagtaattgctacttatcgagagttgttggatcaatgaagataagttgcctagctccattggaatttctcctgttagttgattcgaggacaaatcaa |
15040432 |
T |
|
| Q |
298 |
gctcctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttcccca |
397 |
Q |
| |
|
| |||||||| ||||| | | | |||| ||||||| || ||| |||||||||| ||||||||||| |||| | ||||||| |||| |||||||| |
|
|
| T |
15040431 |
gtaaatgtaaattggttgccccaaccaattctagtggtatactccctgttaaattattgttggagattttaaggcttatgagattcttgcgttttcccca |
15040332 |
T |
|
| Q |
398 |
atttggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttgg |
497 |
Q |
| |
|
||| || |||| ||| ||| || | |||||| |||| || ||||||||||||||||||||| |||||||||| || |||||||||||||| | |||||| |
|
|
| T |
15040331 |
attaggtgaaatatggccaaaatatttattaccactcaattccatgtagtacaagtttggacacacaccaaagctatctgttatatttccagcaagttgg |
15040232 |
T |
|
| Q |
498 |
ttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactg |
568 |
Q |
| |
|
||||| ||||| |||| |||||| || ||||| |||||||||||||||| ||||| | | ||||||||||| |
|
|
| T |
15040231 |
ttttgttcaagtctcactctctttagacttgaacaattcttcaaactctttggaattggacctgtgaactg |
15040161 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #12
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 1 - 121
Target Start/End: Complemental strand, 14481957 - 14481837
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| | ||||| |||||| |||||||||||||| |||||||||| || | |||| |||||| ||| |||||||| || |||||||| ||||| |
|
|
| T |
14481957 |
taagatcaagatcttcaagaacatttaattggccaaactcgacaggaatgtttccttcaaacatatttttgcttaaattcaagtgtaataacattgacaa |
14481858 |
T |
|
| Q |
101 |
cataccaagttttttagggat |
121 |
Q |
| |
|
| ||||||| ||| ||||| |
|
|
| T |
14481857 |
acttccaagttgttttgggat |
14481837 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0400
Description:
Target: scaffold0400; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 12751 - 12187
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||| ||||| | ||||||||| | ||||||||||||||| |||||||| || | |||| ||||||||||||||||||| || | |||| |||||| |
|
|
| T |
12751 |
taaggtcaagatcttcaataacttctaattggccaaactcaatgggaatgtttccttcaaacctattttggctcaaattcaaatgtattaactcagacaa |
12652 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| | |||||| || |||||||||||||||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
12651 |
ccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggcagttagtgcctgcagtgatgcaatttgtacaggaacttctccc |
12552 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
|||||| ||||||| ||| |||||||||| ||||||||||||| | ||| |||||||||||||||||| | |||||||||||||||| ||||| | |
|
|
| T |
12551 |
aaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaatttttccagtaagatggtttgaagacagattaagtt |
12452 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
| ||||| | |||||||| ||||||||| | ||||||||||| |||||||||| |||||||||| || | |||||| || |||||||| |||||||| |
|
|
| T |
12451 |
cttgtaattgtgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatt |
12352 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
||| || | ||| ||||||||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||||||||||| || | ||| ||| |
|
|
| T |
12351 |
tggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgattt |
12252 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaa |
565 |
Q |
| |
|
| | |||||| | ||| ||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12251 |
ttttgaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaa |
12187 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0400; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 6463 - 5892
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||||||||||||||||| || | |||||||||||||||||||||||| | |||||| ||| || |
|
|
| T |
6463 |
taagatcaagattttcaataattttcaattgtccaaactcagcaggaatgtctccttcaaacttattttggctcaaattcaagtccaataaattaggtaa |
6364 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| ||||||| || |||||||||||||| ||||||||| ||||||||||||| ||||| || ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
6363 |
tcttccaagttgttctgggatgaagccactgaaattatttgttgcaagctccaagatagttattttatgcaataatgcaatttgttcaggaacttctcct |
6264 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
|||||||||| |||||| |||| | || ||| | ||||||| | ||| |||||||||||||| ||| | || || || || || | || || |
|
|
| T |
6263 |
acaagatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttggaatttctcctgtgagttgattcgaggaaaggtccagta |
6164 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
|||||| |||||| | | | ||| ||||||||||||||| || |||||||||| | | ||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
6163 |
tagttaaattggttgcttcggccaattcgggtggtatgcttcctgatatattattattgaaaactttaaggcttgtgagattcttgcactttccccaatt |
6064 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||| || | ||| || |||||||||||||| || |||||||||||| | |||||||||||| |
|
|
| T |
6063 |
tggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacaccaaagctatctgttatatttgcagtcagttggttt |
5964 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
572 |
Q |
| |
|
|| | ||| |||| ||||||||||||||||||||| || ||||||| ||||||||| || ||||||||||| |
|
|
| T |
5963 |
tgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagaccaatgaactggtta |
5892 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365 (Bit Score: 197; Significance: 1e-107; HSPs: 2)
Name: scaffold0365
Description:
Target: scaffold0365; HSP #1
Raw Score: 197; E-Value: 1e-107
Query Start/End: Original strand, 1 - 565
Target Start/End: Complemental strand, 13394 - 12830
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||| ||||| | ||||||||| | ||||||||||||||| |||||||| || | |||| ||||||||||||||||||| || | |||| |||||| |
|
|
| T |
13394 |
taaggtcaagatcttcaataacttctaattggccaaactcaatgggaatgtttccttcaaacctattttggctcaaattcaaatgtattaactcagacaa |
13295 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| | |||||| || |||||||||||||||| ||||||||| || |||||||||| ||||||||| |||| ||||||||||||||||||||||||||| |
|
|
| T |
13294 |
ccttccaagtcttctagggatgaagccacttaaattatttttttcaagctccaaggcagttagtgcctgcagtgatgcaatttgtacaggaacttctccc |
13195 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
|||||| ||||||| ||| |||||||||| ||||||||||||| | ||| |||||||||||||||||| | |||||||||||||||| ||||| | |
|
|
| T |
13194 |
aaaagattattgttatttatcgagagtttgattaacaaagataagtttcctagctcctttggaatttttccagtaagatggtttgaagacagattaagtt |
13095 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
| ||||| | |||||||| ||||||||| | ||||||||||| |||||||||| |||||||||| || | |||||| || |||||||| |||||||| |
|
|
| T |
13094 |
cttgtaattgtgttgctccacctagttcttgcggtatgcttccagttaaattattgttggagatttgaagacttgtgagtttcttgcacttaccccaatt |
12995 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
||| || | ||| ||||||||||||||||||||||| ||||||||| ||| | |||||| |||||||||| |||||||||||||| || | ||| ||| |
|
|
| T |
12994 |
tggtgatatatggccataaaaattattatcacttaattccatgtagaccaaatgtggataaacaccaaaaccatctgttatatttccagttaattgattt |
12895 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaa |
565 |
Q |
| |
|
| | |||||| | ||| ||||||| |||||||||||||||||| |||||||| |||||||| |
|
|
| T |
12894 |
ttttgaagcctaactctaataaggctggagcaattcttcaaactcattggaactaatcctgtgaa |
12830 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0365; HSP #2
Raw Score: 168; E-Value: 1e-89
Query Start/End: Original strand, 1 - 572
Target Start/End: Complemental strand, 7107 - 6536
Alignment:
| Q |
1 |
taagatcaaggttttcaataacattcaattggccaaactcagcaggaatgttccccttaaacttattttggctcaaattcaactgcaataacatagacaa |
100 |
Q |
| |
|
|||||||||| |||||||||| |||||||| ||||||||||||||||||| || | |||||||||||||||||||||||| | |||||| ||| || |
|
|
| T |
7107 |
taagatcaagattttcaataattttcaattgtccaaactcagcaggaatgtctccttcaaacttattttggctcaaattcaagtccaataaattaggtaa |
7008 |
T |
|
| Q |
101 |
cataccaagttttttagggatgaagccactcaaattatttattgcaagctccaatgcagttagttgatgcaatgatgcaatttgtacaggaacttctcca |
200 |
Q |
| |
|
| ||||||| || |||||||||||||| ||||||||| ||||||||||||| ||||| || ||||||| ||||||||||| ||||||||||||| |
|
|
| T |
7007 |
tcttccaagttgttctgggatgaagccactgaaattatttgttgcaagctccaagatagttattttatgcaataatgcaatttgttcaggaacttctcct |
6908 |
T |
|
| Q |
201 |
gaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttcccattagatggtttgaagacaagttaagct |
300 |
Q |
| |
|
|||||||||| |||||| |||| | || ||| | ||||||| | ||| |||||||||||||| ||| | || || || || || | || || |
|
|
| T |
6907 |
acaagatgattgctacttatcaagagctggatcaatgaggataagtttcctagctcctttggaatttctcctgtgagttgattcgaggaaaggtccagta |
6808 |
T |
|
| Q |
301 |
cctgtaaatttgttgctctgcctagttctggtggtatgcttcctattaaattattattggagatttttaggcctgtgagatttttgcactttccccaatt |
400 |
Q |
| |
|
|||||| |||||| | | | ||| ||||||||||||||| || |||||||||| | | ||| |||| ||||||||| ||||||||||||||||| |
|
|
| T |
6807 |
tagttaaattggttgcttcggccaattcgggtggtatgcttcctgatatattattattgaaaactttaaggcttgtgagattcttgcactttccccaatt |
6708 |
T |
|
| Q |
401 |
tggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttt |
500 |
Q |
| |
|
|||||| |||||||||||||||||||||||||| || ||||| || | ||| || |||||||||||||| || |||||||||||| | |||||||||||| |
|
|
| T |
6707 |
tggagagagatgaccataaaaattattatcactcaattccatatattccaaattcggatacacaccaaagctatctgttatatttgcagtcagttggttt |
6608 |
T |
|
| Q |
501 |
tgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
572 |
Q |
| |
|
|| | ||| |||| ||||||||||||||||||||| || ||||||| ||||||||| || ||||||||||| |
|
|
| T |
6607 |
tgttgaagtctcactctcttaaggcttgagcaattttttaaactctttggaactagaccaatgaactggtta |
6536 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 58; Significance: 5e-24; HSPs: 7)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 387 - 572
Target Start/End: Complemental strand, 16102468 - 16102283
Alignment:
| Q |
387 |
cactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttc |
486 |
Q |
| |
|
|||||||||||||| | ||||| || || |||||||| || ||||||||||| ||||| | ||| |||||||| |||| |||| | ||||||||||| |
|
|
| T |
16102468 |
cactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaatttggataaacactaaaatcttgtgttatatttc |
16102369 |
T |
|
| Q |
487 |
ccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
572 |
Q |
| |
|
| || ||||||||||| ||||| || ||||| ||| ||| ||||||||||||||||||| |||||| |||| ||||| |||||| |
|
|
| T |
16102368 |
cagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta |
16102283 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #2
Raw Score: 58; E-Value: 5e-24
Query Start/End: Original strand, 387 - 572
Target Start/End: Complemental strand, 16172146 - 16171961
Alignment:
| Q |
387 |
cactttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttc |
486 |
Q |
| |
|
|||||||||||||| | ||||| || || |||||||| || ||||||||||| ||||| | ||| |||||||| |||| |||| | ||||||||||| |
|
|
| T |
16172146 |
cactttccccaattcgatgaaaggtgtccgtaaaaattgttttcacttaagtctatgtaattcaaatttggataaacactaaaatcttgtgttatatttc |
16172047 |
T |
|
| Q |
487 |
ccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
572 |
Q |
| |
|
| || ||||||||||| ||||| || ||||| ||| ||| ||||||||||||||||||| |||||| |||| ||||| |||||| |
|
|
| T |
16172046 |
cagtaagttggttttggtcaagtctaagtcttataatgctagagcaattcttcaaactcttaggaactcggccggtgaagtggtta |
16171961 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #3
Raw Score: 41; E-Value: 0.00000000000007
Query Start/End: Original strand, 472 - 572
Target Start/End: Complemental strand, 14605399 - 14605299
Alignment:
| Q |
472 |
tctctgttatatttcccgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtt |
571 |
Q |
| |
|
|||||||||||||||| || ||||||||||| ||||| || | || ||| ||| ||||||||||||||||||| ||||||| ||||||||| ||||| |
|
|
| T |
14605399 |
tctctgttatatttccagtaagttggttttgttcaagtctaatcctaataatgctagagcaattcttcaaactctttggaactgagcctgtgaagtggtt |
14605300 |
T |
|
| Q |
572 |
a |
572 |
Q |
| |
|
| |
|
|
| T |
14605299 |
a |
14605299 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #4
Raw Score: 40; E-Value: 0.0000000000003
Query Start/End: Original strand, 414 - 545
Target Start/End: Complemental strand, 17848090 - 17847959
Alignment:
| Q |
414 |
ccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcccgtcagttggttttgatcaagcctca |
513 |
Q |
| |
|
|||||||||||||| | ||| || | |||||| | ||| || |||||||||||||| |||||||||||||| | ||||||||||| |||||||| | |
|
|
| T |
17848090 |
ccataaaaattattttgactcaaatgcatgtaatccaaattcggatacacaccaaagaaatctgttatatttccagaaagttggttttgttcaagcctaa |
17847991 |
T |
|
| Q |
514 |
gtctcttaaggcttgagcaattcttcaaactc |
545 |
Q |
| |
|
||| || |||||||||||||||||||||| |
|
|
| T |
17847990 |
ttcttacaatgcttgagcaattcttcaaactc |
17847959 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #5
Raw Score: 37; E-Value: 0.00000000002
Query Start/End: Original strand, 388 - 572
Target Start/End: Complemental strand, 16024666 - 16024482
Alignment:
| Q |
388 |
actttccccaatttggagaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaaactctctgttatatttcc |
487 |
Q |
| |
|
||||| ||||||| | ||||| || ||||||||||| || | |||||| | |||||| ||| | |||||| |||||||| || ||||||||||| |
|
|
| T |
16024666 |
acttttcccaattggatgaaaggtgtccataaaaattgttttgacttaattgcatgtaaaccaaatctggatatacaccaaagtcttcggttatatttcc |
16024567 |
T |
|
| Q |
488 |
cgtcagttggttttgatcaagcctcagtctcttaaggcttgagcaattcttcaaactctctggaactaggcctgtgaactggtta |
572 |
Q |
| |
|
|| ||||||||||| ||||| | ||||| ||| ||| ||||||||||||||||||| |||||| |||| ||||| |||||| |
|
|
| T |
16024566 |
agtaagttggttttgttcaagtcgaagtcttataatgctagagcaattcttcaaactctttggaacgcggccagtgaagtggtta |
16024482 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #6
Raw Score: 36; E-Value: 0.00000000007
Query Start/End: Original strand, 171 - 294
Target Start/End: Original strand, 15677392 - 15677515
Alignment:
| Q |
171 |
aatgatgcaatttgtacaggaacttctccagaaagatgattgttacttaaggagagtttgaacaacaaagataagtattctaactcctttggaatttttc |
270 |
Q |
| |
|
||||||||||||||||| ||||| | ||||||||||| ||||| ||||| ||||| | ||||| || |||| ||||||||||||||||||| | |
|
|
| T |
15677392 |
aatgatgcaatttgtaccggaacattaccagaaagatggttgttgcttaaatagagtctacccaacatagtcaagttgcctaactcctttggaattttac |
15677491 |
T |
|
| Q |
271 |
ccattagatggtttgaagacaagt |
294 |
Q |
| |
|
| || |||||||||||||| |||| |
|
|
| T |
15677492 |
caataagatggtttgaagataagt |
15677515 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7; HSP #7
Raw Score: 29; E-Value: 0.000001
Query Start/End: Original strand, 405 - 469
Target Start/End: Original strand, 17826625 - 17826689
Alignment:
| Q |
405 |
gaaagatgaccataaaaattattatcacttaagtccatgtagtacaagtttggatacacaccaaa |
469 |
Q |
| |
|
||||| || |||||||||| ||| ||||| || | |||||||||||| ||||||| ||||||||| |
|
|
| T |
17826625 |
gaaaggtggccataaaaatgattttcactcaactgcatgtagtacaaatttggatgcacaccaaa |
17826689 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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