View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_22 (Length: 404)
Name: NF19267_high_22
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_22 |
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Alignment Details
Target: chr2 (Bit Score: 357; Significance: 0; HSPs: 2)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 357; E-Value: 0
Query Start/End: Original strand, 26 - 394
Target Start/End: Complemental strand, 45334084 - 45333716
Alignment:
| Q |
26 |
acacacaaacttttaaatgtttgctgctacctttttgttagaacttttgtgttgaaatttaaaatattgttgtgaggaggagaacaatgatgatttttga |
125 |
Q |
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| T |
45334084 |
acacacaaacttttaaatgtttgctgctacctttttgttagaacttttgtgttgaaatttaaaatattgttgtgaagaggagaacaatgatgatttttga |
45333985 |
T |
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| Q |
126 |
tatgttatatatggatacgttttattagcaaatggacatgtccgaatgatgttgtttcttggaactcaactctacgagaatactacaaaactacatgtcc |
225 |
Q |
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| T |
45333984 |
tatgttatatatggatacgttttattagcaaatggacatgtccgaatgatgttgtttcttggaactcaactctacgagaatactacaaaactacatgtcc |
45333885 |
T |
|
| Q |
226 |
tttttgtgaagtttcgtgtgctatttagttgatacatgaatgaaacataatcaacctggttttgttttcctagtatatgaaccttaaattttgctctaac |
325 |
Q |
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| T |
45333884 |
tttttgtgaagtttcttgtgctatttagttgatacatgaatgaaacataatcaacctggttttgttttcctagtatatgaaccttaaattttgctctaac |
45333785 |
T |
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| Q |
326 |
tcagggagctagaaatcaagctaataatatgttcctcattggatgataaaatacctcactattgactgt |
394 |
Q |
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| T |
45333784 |
tcagggagctagaaatcaagcttataatatgttcctcattggatgataaaatacctcactattgactgt |
45333716 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2; HSP #2
Raw Score: 29; E-Value: 0.0000006
Query Start/End: Original strand, 24 - 60
Target Start/End: Complemental strand, 45334121 - 45334085
Alignment:
| Q |
24 |
acacacacaaacttttaaatgtttgctgctacctttt |
60 |
Q |
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| T |
45334121 |
acacacacacacttttaaatgattgctgctacctttt |
45334085 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr7 (Bit Score: 134; Significance: 1e-69; HSPs: 1)
Name: chr7
Description:
Target: chr7; HSP #1
Raw Score: 134; E-Value: 1e-69
Query Start/End: Original strand, 209 - 394
Target Start/End: Original strand, 11271316 - 11271500
Alignment:
| Q |
209 |
tacaaaactacatgtcctttttgtgaagtttcgtgtgctatttagttgatacatgaatgaaacataatcaacctggttttgttttcctagtatatgaacc |
308 |
Q |
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||||||||||| |||||||||||||||||||| || ||||||||||||||||||||||||||| |||||||||||||||| ||||||| |||||||||| |
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| T |
11271316 |
tacaaaactacgtgtcctttttgtgaagtttcttgcgctatttagttgatacatgaatgaaacgtaatcaacctggttttattttcctc-tatatgaacc |
11271414 |
T |
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| Q |
309 |
ttaaattttgctctaactcagggagctagaaatcaagctaataatatgttcctcattggatgataaaatacctcactattgactgt |
394 |
Q |
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|||| ||||| |||||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||||| |||||||| |
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| T |
11271415 |
ttaatttttgatctaactcagggagctagaaatcaagcttatgatatgttcctcattggatgataaaatacctcacttttgactgt |
11271500 |
T |
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