View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_high_23 (Length: 399)
Name: NF19267_high_23
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_23 |
 | |
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| [»] scaffold0042 (1 HSPs) |
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Alignment Details
Target: chr1 (Bit Score: 353; Significance: 0; HSPs: 5)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 353; E-Value: 0
Query Start/End: Original strand, 1 - 385
Target Start/End: Original strand, 14874593 - 14874972
Alignment:
| Q |
1 |
tttcattagattagtttaagagataccttggtttaaaattttaaaccaaatacccgaaccaaacgaagcatattatgaagattaaaaaactatacctgaa |
100 |
Q |
| |
|
|||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14874593 |
tttcattagattagtttaagagataccttggttt-----tttaaaccaaatacccgaaccaaacgaagcatattatgaagattaaaaaactatacctgaa |
14874687 |
T |
|
| Q |
101 |
taagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatcacccaaatc |
200 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14874688 |
taagcagcaatggagtgttaagcacatctgaagaaccaagaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatcacccaaatc |
14874787 |
T |
|
| Q |
201 |
tttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaatctacctgca |
300 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |
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|
| T |
14874788 |
tttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaacctacctgca |
14874887 |
T |
|
| Q |
301 |
aatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcatagt |
385 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||| |
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|
| T |
14874888 |
aatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggaacatagt |
14874972 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 234; E-Value: 1e-129
Query Start/End: Original strand, 89 - 382
Target Start/End: Original strand, 14879962 - 14880255
Alignment:
| Q |
89 |
actatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagt |
188 |
Q |
| |
|
|||||||||||||||||| |||||||||||||| ||||||||||||||||||||||| ||||||||| |||||||| ||| |||||||||||||||||| |
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|
| T |
14879962 |
actatacctgaataagcatcaatggagtgttaatcacatctgaagaaccaggaacataataaagaagctcatccaagcaaggaaatggaggatgaagagc |
14880061 |
T |
|
| Q |
189 |
atcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctt |
288 |
Q |
| |
|
|||||| || ||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14880062 |
atcaccaaactctttaagagtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctt |
14880161 |
T |
|
| Q |
289 |
aatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcat |
382 |
Q |
| |
|
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||||| |
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|
| T |
14880162 |
aatctacctgcaaatggataataaaatacaagtgtttttgctaatgcttttctaataacatcaacaggatctttccctgccatatttggatcat |
14880255 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 210; E-Value: 1e-115
Query Start/End: Original strand, 90 - 383
Target Start/End: Complemental strand, 14757400 - 14757107
Alignment:
| Q |
90 |
ctatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagta |
189 |
Q |
| |
|
||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| |
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|
| T |
14757400 |
ctatacctgaataagcagcaatggagtgttaagcatatctgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatct |
14757301 |
T |
|
| Q |
190 |
tcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttccctta |
289 |
Q |
| |
|
||||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| |
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|
| T |
14757300 |
tcaccaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctacccggaccttccctta |
14757201 |
T |
|
| Q |
290 |
atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcata |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||| |
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|
| T |
14757200 |
atctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcata |
14757107 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 200; E-Value: 1e-109
Query Start/End: Original strand, 92 - 383
Target Start/End: Original strand, 14769473 - 14769764
Alignment:
| Q |
92 |
atacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatc |
191 |
Q |
| |
|
|||||||||| | || ||||||| ||||||||| ||||||||||||||||||||| ||||||| |||||||||||| |||| ||||| ||||||| ||| |
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|
| T |
14769473 |
atacctgaatcaccaacaatggacagttaagcacttctgaagaaccaggaacatcaaaaagaagctcatccaaacaaggaaaaggaggttgaagagcatc |
14769572 |
T |
|
| Q |
192 |
acccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
291 |
Q |
| |
|
||| || ||||| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
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|
| T |
14769573 |
accaaattctttcaaactaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaat |
14769672 |
T |
|
| Q |
292 |
ctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcata |
383 |
Q |
| |
|
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| |||||||| ||||||||| |
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|
| T |
14769673 |
ctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataaaatcaacaggatctttacctgccatatttggatcata |
14769764 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 181; E-Value: 1e-97
Query Start/End: Original strand, 91 - 383
Target Start/End: Original strand, 14789521 - 14789813
Alignment:
| Q |
91 |
tatacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtat |
190 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||| ||||| | ||| ||||||||||||||||| | |
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|
| T |
14789521 |
tatacctgaataagcagcaatggagtgttaagcacaactgaagaaccaggaacatcataaagaagctcatctatgcaaggaaatggaggatgaagatctt |
14789620 |
T |
|
| Q |
191 |
cacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaa |
290 |
Q |
| |
|
|||| || | || || |||||||| |||||||||||||||||||||| |||||| || | |||||||||||||||||||||| |||||||||||||| |
|
|
| T |
14789621 |
caccaaattgttcaagagtaacatcagcatcagcttcaataaacaaaataccttcatcattacaatccaccataagtttcctacttggaccttcccttaa |
14789720 |
T |
|
| Q |
291 |
tctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcata |
383 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| |||||| |||||||| ||||||||| |
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|
| T |
14789721 |
tctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataatatcaacagggtctttccctgccatatttggatcata |
14789813 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: scaffold0042 (Bit Score: 153; Significance: 6e-81; HSPs: 1)
Name: scaffold0042
Description:
Target: scaffold0042; HSP #1
Raw Score: 153; E-Value: 6e-81
Query Start/End: Original strand, 93 - 385
Target Start/End: Original strand, 91636 - 91928
Alignment:
| Q |
93 |
tacctgaataagcagcaatggagtgttaagcacatctgaagaaccaggaacatcataaagaagttcatccaaacaacgaaatggaggatgaagagtatca |
192 |
Q |
| |
|
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||| | ||| ||| |||| || |||||||||||||||| | |||| |
|
|
| T |
91636 |
tacctgaataagcagcaatggagtgttaagaacatctgaagaaccaggaacatcatagataagctcacccaagcatggaaatggaggatgaagtgcatca |
91735 |
T |
|
| Q |
193 |
cccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctccagtgcaatccaccataagtttcctaccaggaccttcccttaatc |
292 |
Q |
| |
|
|| || | ||||| |||||||| ||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| || ||||||||||| || | |
|
|
| T |
91736 |
ccaaattgtttaagagtaacatcagcatcagcttcaataaacaaaacaccttctccagtacaatcaaccataagtttcctgccgggaccttccctcaacc |
91835 |
T |
|
| Q |
293 |
tacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcatagt |
385 |
Q |
| |
|
||||||| |||||||||||||||||||| ||||| || | ||||||||||||||| ||||||| ||||| || |||||| ||||| ||||| |
|
|
| T |
91836 |
tacctgccaatggataataaaacacaagcgttttcgcaagggcttttctaataacaacaacagggtctttgccttccataattggattatagt |
91928 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8 (Bit Score: 139; Significance: 1e-72; HSPs: 1)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 139; E-Value: 1e-72
Query Start/End: Original strand, 149 - 383
Target Start/End: Complemental strand, 14857695 - 14857461
Alignment:
| Q |
149 |
aaagaagttcatccaaacaacgaaatggaggatgaagagtatcacccaaatctttaatggtaacatctgcatcagcttcaataaacaaaacaccttctcc |
248 |
Q |
| |
|
||||||| |||||||||||| |||| ||||| ||||||| |||||| || ||||| | ||||||| |||||||||||||||||||||| |||||| | |
|
|
| T |
14857695 |
aaagaagctcatccaaacaaggaaaaggaggttgaagagcatcaccaaattctttcaaactaacatcagcatcagcttcaataaacaaaataccttcatc |
14857596 |
T |
|
| Q |
249 |
agtgcaatccaccataagtttcctaccaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataaca |
348 |
Q |
| |
|
| | ||||| |||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
|
|
| T |
14857595 |
attacaatctaccataagcttcctaccaggaccttcccttaatctacctgcaaatggataataaaacacaagtgtttttgctaatgcttttctaataata |
14857496 |
T |
|
| Q |
349 |
tcaacaggatctttctctgccataactggatcata |
383 |
Q |
| |
|
|||||||| |||||| |||||||| ||||||||| |
|
|
| T |
14857495 |
tcaacagggtctttccctgccatatttggatcata |
14857461 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr4 (Bit Score: 40; Significance: 0.0000000000002; HSPs: 1)
Name: chr4
Description:
Target: chr4; HSP #1
Raw Score: 40; E-Value: 0.0000000000002
Query Start/End: Original strand, 316 - 383
Target Start/End: Complemental strand, 35368856 - 35368789
Alignment:
| Q |
316 |
acaagtgtttttgctaatgcttttctaataacatcaacaggatctttctctgccataactggatcata |
383 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||| | |||||| || |||||| ||||||||| |
|
|
| T |
35368856 |
acaagtgtttttgcaattgcttttctaataacatcaacaaggtctttcccttccataattggatcata |
35368789 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr3 (Bit Score: 36; Significance: 0.00000000004; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 36; E-Value: 0.00000000004
Query Start/End: Original strand, 316 - 363
Target Start/End: Original strand, 33003102 - 33003149
Alignment:
| Q |
316 |
acaagtgtttttgctaatgcttttctaataacatcaacaggatctttc |
363 |
Q |
| |
|
|||||||||||||| | |||||||||||||||||||||||| |||||| |
|
|
| T |
33003102 |
acaagtgtttttgcaattgcttttctaataacatcaacagggtctttc |
33003149 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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