View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
|
Alignment Overview
Query: NF19267_high_28 (Length: 386)
Name: NF19267_high_28
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_28 |
 | |
|
Alignment Details
Target: chr3 (Bit Score: 338; Significance: 0; HSPs: 1)
Name: chr3
Description:
Target: chr3; HSP #1
Raw Score: 338; E-Value: 0
Query Start/End: Original strand, 13 - 368
Target Start/End: Complemental strand, 35316855 - 35316503
Alignment:
| Q |
13 |
aatatacattgcctaataatctacaccattaagctaagacttgtaattttatattttatgaggaaagctaaggacatttttcttttggtagaagaaagtt |
112 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35316855 |
aatatacattgcctaataatctacaccattaagctaagacttgtaattttatattttatgaggaaagctaaggacatttttcttttggtagaagaaagtt |
35316756 |
T |
|
| Q |
113 |
aaaactttttagataaatatcctccaccaaatctagatggccatttaaattattccttttaacttttagtttaatgcttttaaagtacaattgcatttga |
212 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35316755 |
aaaactttttagataaatatcctccaccaaatctagatggccatttaaattattccttttaacttttagtttaatgcttttaaagtacaattgcatttga |
35316656 |
T |
|
| Q |
213 |
ttagaaatacctaattttaggctgatatgttttactttctcttaattcttagtataataataaattaatttctcactccttttgaacacatgaaccccag |
312 |
Q |
| |
|
|||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35316655 |
ttagaaatacctaattttaggctgatatgttttactttctcttaattcttagtata---ataaattaatttctcactccttttgaacacatgaaccccag |
35316559 |
T |
|
| Q |
313 |
aaaccgtacaagactcaaaagtttatcaaaattttcatgggtttgtgccaacttac |
368 |
Q |
| |
|
||||| |||||||||||||||||||||||||||||||||||||||||||||||||| |
|
|
| T |
35316558 |
aaaccttacaagactcaaaagtttatcaaaattttcatgggtttgtgccaacttac |
35316503 |
T |
|
Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
© Oklahoma State University