View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_30 (Length: 382)
Name: NF19267_high_30
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_30 |
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Alignment Details
Target: chr8 (Bit Score: 189; Significance: 1e-102; HSPs: 2)
Name: chr8
Description:
Target: chr8; HSP #1
Raw Score: 189; E-Value: 1e-102
Query Start/End: Original strand, 13 - 209
Target Start/End: Original strand, 23121849 - 23122045
Alignment:
| Q |
13 |
aatattattaccatggaaatttgaatcattttagaagcatagggtatgatataagattattgaaaagtgttagcaaatgggtatataaaaaattatctac |
112 |
Q |
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| T |
23121849 |
aatattattaccatggaaatttgaaccattttagaagcatagggtatgatataagattatttaaaagtgttagcaaatgggtatataaaaaattatctac |
23121948 |
T |
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| Q |
113 |
tatttgttatctatctataacaataaaccgagacatgagaagggaaaacacaaataattaaattgataaattagtattctaccacatgtattccatt |
209 |
Q |
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| T |
23121949 |
tatttgttatctatctataacaataaaccgagacatgagaagggaaaacacaaataattaaattgataaattagtattctaccacatgtattccatt |
23122045 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr8; HSP #2
Raw Score: 130; E-Value: 3e-67
Query Start/End: Original strand, 231 - 364
Target Start/End: Original strand, 23122097 - 23122230
Alignment:
| Q |
231 |
caacttgattatgttgtactcccagaatgcacccaaaataagaataatcaaagaggataacataacaaaaagtggattgagagagacaccacaacattta |
330 |
Q |
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| T |
23122097 |
caacttgattatgttgtactcccagaatgcacccaaaataagaataatcaaagaggataaaataacaaaaagtggattgagagagacaccacaacattta |
23122196 |
T |
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| Q |
331 |
gggccagcattcttatatgcaaactgtgccaaat |
364 |
Q |
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| T |
23122197 |
gggccagcattcttatatgcaaactgtgccaaat |
23122230 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5 (Bit Score: 185; Significance: 1e-100; HSPs: 2)
Name: chr5
Description:
Target: chr5; HSP #1
Raw Score: 185; E-Value: 1e-100
Query Start/End: Original strand, 13 - 209
Target Start/End: Complemental strand, 22630728 - 22630532
Alignment:
| Q |
13 |
aatattattaccatggaaatttgaatcattttagaagcatagggtatgatataagattattgaaaagtgttagcaaatgggtatataaaaaattatctac |
112 |
Q |
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| T |
22630728 |
aatattattaccatggaaatttgaatcattttagaagcatagagtatgatataagattatttaaaagtgttagcaaatgggtatataaaaaattatctac |
22630629 |
T |
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| Q |
113 |
tatttgttatctatctataacaataaaccgagacatgagaagggaaaacacaaataattaaattgataaattagtattctaccacatgtattccatt |
209 |
Q |
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| T |
22630628 |
tatttgttatctatctataacattaaaccgagacatgagaagggaaaacacaaataattaaattgataaattagtattctaccacatgtattccatt |
22630532 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr5; HSP #2
Raw Score: 105; E-Value: 2e-52
Query Start/End: Original strand, 232 - 364
Target Start/End: Complemental strand, 22630479 - 22630347
Alignment:
| Q |
232 |
aacttgattatgttgtactcccagaatgcacccaaaataagaataatcaaagaggataacataacaaaaagtggattgagagagacaccacaacatttag |
331 |
Q |
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| T |
22630479 |
aacttgatcatgttgtacttcctgaatgcacccaaaataggaataattaaagaggataaaataacaaaaagtgggttgagagagacaccacaacatttag |
22630380 |
T |
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| Q |
332 |
ggccagcattcttatatgcaaactgtgccaaat |
364 |
Q |
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| T |
22630379 |
ggccagcattcttatatgcaaactgtgccaaat |
22630347 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr2 (Bit Score: 43; Significance: 0.000000000000002; HSPs: 1)
Name: chr2
Description:
Target: chr2; HSP #1
Raw Score: 43; E-Value: 0.000000000000002
Query Start/End: Original strand, 233 - 345
Target Start/End: Complemental strand, 24070537 - 24070417
Alignment:
| Q |
233 |
acttgattatgttgtactcccagaatgcacccaaaataagaataatca------aagaggataacataacaaaaagtggattgagagagacaccacaa-- |
324 |
Q |
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|||| ||||||||||||||| |||||||||||||||||||||||| |||||||||| |||| ||||||||||| |||||| | ||||||| |
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| T |
24070537 |
acttcattatgttgtactccttacatgcacccaaaataagaataatcatgaacgaagaggataaaataagaaaaagtggatagagagaaagaccacaaat |
24070438 |
T |
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| Q |
325 |
catttagggccagcattctta |
345 |
Q |
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| T |
24070437 |
catttagggccaacattctta |
24070417 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr6 (Bit Score: 29; Significance: 0.0000005; HSPs: 1)
Name: chr6
Description:
Target: chr6; HSP #1
Raw Score: 29; E-Value: 0.0000005
Query Start/End: Original strand, 233 - 277
Target Start/End: Original strand, 8847426 - 8847470
Alignment:
| Q |
233 |
acttgattatgttgtactcccagaatgcacccaaaataagaataa |
277 |
Q |
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| T |
8847426 |
acttcattatgttgtactccttgcatgcacccaaaataagaataa |
8847470 |
T |
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