View Alignment
This page shows all the targets hit by the same query that passed the project filter. Click a track to view the detailed alignment.
| Legend |
| | Query |
| | Query hiting target |
| Query hiting target's complemental strand |
| | Query's complemental strand hiting target |
| Query's complemental strand hiting target's complemental strand |
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Alignment Overview
Query: NF19267_high_35 (Length: 357)
Name: NF19267_high_35
Description: NF19267
Algorithm: BLASTN 2.2.26 [Sep-21-2011]
Database: JCVI.Medtr.v4.20130313.fasta (1949 entries, 411831487 letters)
| [»] NF19267_high_35 |
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Alignment Details
Target: chr1 (Bit Score: 256; Significance: 1e-142; HSPs: 6)
Name: chr1
Description:
Target: chr1; HSP #1
Raw Score: 256; E-Value: 1e-142
Query Start/End: Original strand, 18 - 307
Target Start/End: Complemental strand, 48697800 - 48697514
Alignment:
| Q |
18 |
ctttcaatgtcctgaggactccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaac |
117 |
Q |
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| T |
48697800 |
ctttcaatgtcctgaagactccatttacctctccaattacagcttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaac |
48697701 |
T |
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| Q |
118 |
aagaagaataagagcgatgaatgtgaccgaggaggaattcattcttgtatccatattttgaatgaaaatcaaggcttagttaattagtgatctctcttag |
217 |
Q |
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||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||| |
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| T |
48697700 |
aagaagaataagagcgatgaatgtgaccgagga---attcattcttgtatccatattttgaatgaaaatcaaggcttagttaattagtgatctctcatag |
48697604 |
T |
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| Q |
218 |
aaacgtatcttggtgtttatttgtatttgtattggaattgataaagtggcatcatagaggttctatttataggtaaattctaaagccatg |
307 |
Q |
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| T |
48697603 |
aaacgtatcttggtttttatttgtatttgtatttgaattgataaagtggcatcatagaggttctatttataggtaaattctaaagccatg |
48697514 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #2
Raw Score: 106; E-Value: 5e-53
Query Start/End: Original strand, 18 - 143
Target Start/End: Complemental strand, 48701085 - 48700960
Alignment:
| Q |
18 |
ctttcaatgtcctgaggactccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaaggaaac |
117 |
Q |
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| T |
48701085 |
ctttcaatgtcctgaagactccatttacctctccaattacgccttctttgccttgtaatggactaagcaatggccttgcttctgatacaagcaaggaaac |
48700986 |
T |
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| Q |
118 |
aagaagaataagagcgatgaatgtga |
143 |
Q |
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| T |
48700985 |
aagaagaataagagtgaggaatgtga |
48700960 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #3
Raw Score: 88; E-Value: 3e-42
Query Start/End: Original strand, 18 - 193
Target Start/End: Complemental strand, 48693787 - 48693614
Alignment:
| Q |
18 |
ctttcaatgtcctgaggactccattta---cctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgatacaagcaagga |
114 |
Q |
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||||||||||||||| |||||||| | ||||||||||| |||||||||||| |||||| |||||||||||||||||||||||||||||||||||||| |
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| T |
48693787 |
ctttcaatgtcctgaaaactccattcatcacctctccaatttcaccttctttgctttgtaatggactaagcaatggccttgcttctgatacaagcaagga |
48693688 |
T |
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| Q |
115 |
aacaagaagaataagagcgatgaatgtgaccgaggaggaattcattcttgtatccatattttgaatgaaaatcaaggct |
193 |
Q |
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| T |
48693687 |
aacaagaagaataagagtgaagaatgtgac---agaggatttgagtcttatatcc--attttgaatgaaaatcaaggct |
48693614 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #4
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 48680956 - 48680868
Alignment:
| Q |
18 |
ctttcaatgtcctgaggactccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgataca |
106 |
Q |
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||||||||||||||| |||||||||||||||||||||||||||||||| |||||||||||| | ||||||| || |||||||||||| |
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| T |
48680956 |
ctttcaatgtcctgaacactccatttacctctccaattacaccttctttcccttgtaaaggattgagcaatgatctagcttctgataca |
48680868 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #5
Raw Score: 57; E-Value: 1e-23
Query Start/End: Original strand, 18 - 106
Target Start/End: Complemental strand, 48687516 - 48687428
Alignment:
| Q |
18 |
ctttcaatgtcctgaggactccatttacctctccaattacaccttctttgccttgtaaaggactaagcaatggccttgcttctgataca |
106 |
Q |
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|||| |||||||||| |||||||||||||||||||||||||||||| ||||||||| |||||||| |||||||| |||||||||||| |
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| T |
48687516 |
cttttaatgtcctgaaaactccatttacctctccaattacaccttctctgccttgtagtggactaagaaatggcctagcttctgataca |
48687428 |
T |
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Back To:
[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
Target: chr1; HSP #6
Raw Score: 42; E-Value: 0.000000000000009
Query Start/End: Original strand, 254 - 315
Target Start/End: Complemental strand, 48687283 - 48687222
Alignment:
| Q |
254 |
attgataaagtggcatcatagaggttctatttataggtaaattctaaagccatgtgacacta |
315 |
Q |
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| T |
48687283 |
attgatgaagtggcattatagatgttccatttataggtaaattctaaaaccatgtgacacta |
48687222 |
T |
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[ HSP Overview ] [ Target Overview ] [ Alignment Overview ]
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